EY659385

Overview
NameEY659385
Unique NameEY659385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_PYRAR (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=pdxS PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.293e-31
Identity = 75/160 (46.88%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVV 774
            +KAG   MLR G I++V++VEQA+IAE AGA  +MV +          G+ RM D  +++ V   V++PV ++VR+GH+ EA +L+ IG+D IDESEVL   D+ + INK  F  PFV GCR L EALRRI EGA+MIR +G+   +G   E VK+ + +
Sbjct:   50 VKAGFPAMLRNGVIMDVTNVEQAQIAEEAGAVGVMVLDKLPYDVRKAGGVARMADLKVIEEVMSHVTIPVSAKVRIGHYYEAFLLQEIGVDLIDESEVLTPVDDQHHINKWLFTVPFVNGCRELCEALRRISEGASMIRSKGE-AGTGNVSEAVKHFKAL 208          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_CLONO (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Clostridium novyi GN=pdxS PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.911e-31
Identity = 70/129 (54.26%), Postives = 91/129 (70.54%), Query Frame = 1
Query:  448 RMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            RM DP ++K +  AVS+PVM++VR+GH VEAQIL++IG+DYIDESEVL  AD+   INK  F  PFVCG RNLGEALRRI EGA MIR +G+   +G  +E V+++R +    R L  M  +E +  AK
Sbjct:    2 RMSDPKMIKEIIDAVSIPVMAKVRIGHVVEAQILQAIGIDYIDESEVLTPADDLFHINKKEFNVPFVCGARNLGEALRRIGEGACMIRTKGE-AGTGNVIEAVRHMRTIQSQIRKLKVMPKEELMIAAK 129          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_DESK1 (Pyridoxal biosynthesis lyase pdxS OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=pdxS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.713e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILN 798
            +K G   ML+GG I++V++ EQA IAE AGA  +MV +          G+ R  D  +++ V  ++++PV ++ R+GH  EA++LE +G+D IDESEVL   DE   INK  F+ PFV G R+L EALRRI EGA+MIR +G+   +G   E VK++++V  D  +LN
Sbjct:   44 VKYGFVSMLKGGVIMDVTNPEQAIIAEEAGAVGVMVLDKLPYDVRMAGGVARTADVKVIEEVMSSITIPVSAKCRIGHEFEARVLEEVGVDLIDESEVLTPVDEKAHINKWLFKTPFVNGARSLPEALRRIYEGASMIRTKGE-PGTGNVAEAVKHIKIVNRDIYMLN 210          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_PYRAE (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum aerophilum GN=pdxS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.138e-30
Identity = 75/167 (44.91%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRIL 795
            +K G   ML+ G I++V++VEQA+IAE AGA  +MV +          G+ RM D  +++ V   V++PV ++VR+GH+ EA +LE +G+D IDESEVL   DE + INK  F  PFV G R L EALRRI EGA+MIR +G+   +G   E VK+ + + G  + L
Sbjct:   49 VKVGFPAMLKRGVIMDVTNVEQAQIAEDAGAVGVMVLDKLPYDVRRAGGVARMADLKVIEEVMAHVTIPVSAKVRIGHYYEAFLLEQVGVDLIDESEVLTPVDEQHHINKWMFTVPFVNGARELCEALRRISEGASMIRSKGE-AGTGNVAEAVKHFKSIYGAIKSL 214          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_METVA (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Methanococcus vannielii GN=pdxS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.486e-30
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  457 DPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVV 774
            DP ++  +K AVS+PVM++ R+GHFVEAQ+LESIG+D IDESEVL  ADE N INK  F  PFVCG RNLGEALRRI EGAAMIR +G+   +G  VE VK++R V
Sbjct:    1 DPDMIFEIKDAVSIPVMAKARIGHFVEAQVLESIGVDMIDESEVLTPADEINHINKKAFTAPFVCGARNLGEALRRIDEGAAMIRTKGE-AGTGNVVEAVKHMRAV 105          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_HYPBU (Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pdxS PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.643e-29
Identity = 70/167 (41.92%), Postives = 108/167 (64.67%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRIL 795
            ++ G   ML+GG +++V++ +QA+IAE AGA  +MV +          G+ R  D +++++V   +++PV ++ R+GH+ EA++LE IG+D IDESEVL   DE   I K  FR PFV G R+L EALRRI EGA+MIR +G+   +G   E V++++ V  D  +L
Sbjct:   44 VRYGFISMLKGGVVMDVTNEQQAEIAEDAGAVGVMVLDKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIGHYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPFVNGARSLPEALRRIWEGASMIRTKGE-AGTGNVAEAVRHMKAVNRDIAVL 209          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDX1_STELP (Probable pyridoxal biosynthesis protein PDX1 (Fragment) OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.439e-26
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  466 LVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCR-NLGEALRRIREGAA----MIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWVLK 867
            L+K +K AV++PVM++ R+GHFVEAQILESIG+DY+DESEVL  ADE + INKHNF+ PFVCG     G      R G A      R++    ++G  VE V+++R VMG+ R+L NM  DE   +AK+     D V++
Sbjct:    1 LIKEIKAAVTIPVMAKARIGHFVEAQILESIGVDYVDESEVLTPADEDHHINKHNFQIPFVCGLSIPRGAPPPAYRRGYAGHDTGPRVRKP--STGNVVEAVRHIRSVMGEIRLLRNMDDDEVFAYAKKISAAYDLVMQ 137          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXL4_ARATH (Probable PDX1-like protein 4 OS=Arabidopsis thaliana GN=PDX1L4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  241 MAEDGAVTVYGGSAITDAK-KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE 426
            MA  G V VYG  A+T+ K K+PFS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E
Sbjct:    1 MAGTGVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALE 63          
The following BLAST results are available for this feature:
BLAST of EY659385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_PYRAR2.293e-3146.88Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum a... [more]
PDXS_CLONO3.911e-3154.26Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Cl... [more]
PDXS_DESK18.713e-3144.05Pyridoxal biosynthesis lyase pdxS OS=Desulfurococc... [more]
PDXS_PYRAE1.138e-3044.91Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum a... [more]
PDXS_METVA1.486e-3064.15Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Me... [more]
PDXS_HYPBU1.643e-2941.92Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus ... [more]
PDX1_STELP8.439e-2648.20Probable pyridoxal biosynthesis protein PDX1 (Frag... [more]
PDXL4_ARATH3.678e-1360.32Probable PDX1-like protein 4 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659385 ID=EY659385; Name=EY659385; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGTGCTCTTCAACGCTTGGAAAGGTGTCGAAATTTCTACAC
TAATCAATCAATTCCCCACCGACTAACCCCACCTTCGAAGCTCTTCAGAA
CCTTCTCGAACTCGCCCCAATCCTCGCTCTCCCTTCAATTTTATAAACCC
CTTTCCACAAAAAGAAACCCAGTACTCGATCAAACGATTCAATTACTACG
CTTCTTGCATCAGTGAGACATTTTTGCAAACGCCTTTGCAATGGCCGAAG
ACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTACTGACGCCAAGAAA
AACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATGCTACGTGGCGGGGC
CATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGATCGCCGAAGCAGCTG
GCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGCCCGGCATTAAGCGC
ATGCCGGATCCTTCTCTTGTTAAAAGCGTTAAACGCGCCGTTTCAGTCCC
CGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGAAGCGCAGATTCTTG
AAAGTATTGGGCTCGATTACATTGACGAGAGTGAGGTTTTAGGATTAGCT
GATGAATATAATTTTATTAACAAACATAACTTTAGGTTCCCGTTTGTGTG
TGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAATTAGAGAAGGAGCTG
CTATGATAAGAATACAGGGGGATTTGTTAAATTCTGGTAAATATGTCGAG
ACTGTTAAAAATGTGAGGGTCGTTATGGGAGATATNCGAATTTTGAATAA
CATGGGATGAGATGAGGGTCTCACGTTTGCTAAGAGATAGCGGCTCCGTA
TGGATTGGGTGCTCAAACTAACAAATGGGGAGGGNTGCCGTGGGTGCATT
TGCTGCAGGAGTGGTGTG
back to top