EY659385

Overview
NameEY659385
Unique NameEY659385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_CLOAB (Pyridoxal biosynthesis lyase pdxS OS=Clostridium acetobutylicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.975e-44
Identity = 92/176 (52.27%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  325 LAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            LAQML+GG I++V + EQA IAE AGAC++M  E        + G+ RM DP ++K ++ +V++PVM++VR+GHFVEA+IL+S+G+D+IDESEVL  AD+   I+K  F+ PFVCG RNLGEALRRI EGA+MIR +G+   +G  VE VK++R VM + R + N   +E +T AK
Sbjct:   12 LAQMLKGGVIMDVINKEQAIIAEKAGACAVMALERVPADIRKQGGVARMSDPKMIKEIRESVTIPVMAKVRIGHFVEAEILQSLGIDFIDESEVLTPADDSYHIDKKAFKVPFVCGARNLGEALRRIGEGASMIRTKGE-AGTGNVVEAVKHMRTVMDEIRRVKNAAKEEIMTIAK 186          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_METLZ (Pyridoxal biosynthesis lyase pdxS OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.172e-43
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 1
Query:  298 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +N   +   LAQML+GG I++V+S EQAKIAE AGAC++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+ N I+K+ F  PFVCG R+LGEALRR+ EGA MIR +G+   +G  V+ V+++R +  + R + ++  DE    AK
Sbjct:    3 ENRSKLNKELAQMLKGGVIMDVTSPEQAKIAEDAGACAVMALERIPADIRAAGGVSRMSDPKMIKGIQNAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDLNHIDKNKFNVPFVCGARDLGEALRRVAEGATMIRTKGE-AGTGDIVQAVRHMRTMNSEIRRVVSLRQDELYVAAK 186          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_SYNAS (Pyridoxal biosynthesis lyase pdxS OS=Syntrophus aciditrophicus (strain SB) GN=pdxS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.531e-43
Identity = 95/185 (51.35%), Postives = 130/185 (70.27%), Query Frame = 1
Query:  298 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            K  + +   LAQML+GG I++V++VEQA+IAE AGA ++M  E       ++ G+ RM DPS++  +K++VS+PVM++ R+GHFVEAQILE++ +DYIDESEVL  ADE   I+K  F  PFVCG RNLGEALRRI EGAAMIR +G+   +G  VE V+++R +  + R L  M  +E   FAK
Sbjct:    3 KKRYELNVQLAQMLKGGVIMDVTNVEQARIAEDAGAVAVMALERVPADIRAQGGVARMSDPSMIVEIKKSVSIPVMAKARIGHFVEAQILEALKIDYIDESEVLTPADEECHIDKTRFSIPFVCGARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRTMNREIRQLVGMPVEEVTVFAK 186          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDX1_NEUCR (Probable pyridoxine biosynthesis protein pdx-1 OS=Neurospora crassa GN=pdx-1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.531e-43
Identity = 90/172 (52.33%), Postives = 125/172 (72.67%), Query Frame = 1
Query:  277 SAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVV 774
            S  T    + F++KAGLAQML+GG I++V++  +A+IAE AGAC++M  E  PS      G+ RM +PS++K ++ AV++PVM++ R+GH  E +ILE +G+DYIDESEVL  AD+   + K  F+ PFVCGCRNLGEALRRI+EGAAMIR +G+   +G  VE VK++R V
Sbjct:    3 STSTTTNGDSFTVKAGLAQMLKGGVIMDVTTPAEARIAEEAGACAVMALERIPSDIRAAGGVARMSNPSMIKEIQAAVTIPVMAKARIGHVTECRILEQLGVDYIDESEVLTPADDTYHVQKDQFKAPFVCGCRNLGEALRRIKEGAAMIRTKGE-AGTGDVVEAVKHIRTV 173          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_BACCN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pdxS PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.611e-43
Identity = 90/180 (50.00%), Postives = 130/180 (72.22%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE N +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +G  VE V+++R V  + R + N+  DE +T+AK
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVANLREDELMTYAK 188          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDX1_CERNC (Pyridoxine biosynthesis protein PDX1 OS=Cercospora nicotianae GN=PDX1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.410e-43
Identity = 88/165 (53.33%), Postives = 121/165 (73.33%), Query Frame = 1
Query:  298 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVV 774
            ++ F++K GLAQML+GG I++V + EQA+IAE AGAC++M  E          G+ RM DP ++K +  AV++PVM++ R+GHFVE QIL++IG+DYIDESEVL  AD  N I+K  +  PFVCGC+NLGEALRRI EGAAMIR +G+   +G  VE V++++ V
Sbjct:   53 QSSFAVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRKDGGVARMSDPQMIKDIMNAVTIPVMAKSRIGHFVECQILQAIGVDYIDESEVLTPADPVNHIDKSVYNVPFVCGCKNLGEALRRISEGAAMIRTKGE-AGTGDVVEAVRHMQTV 216          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_CORDI (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium diphtheriae GN=pdxS PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.454e-43
Identity = 96/189 (50.79%), Postives = 128/189 (67.72%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWV 861
            +K GLA ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L++ +  AVS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  AD  N I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G   E VK++R + G+   L +M  D+    AK  +   D V
Sbjct:   12 VKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRAQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLSPADYVNHIDKWNFDVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSEAVKHLRTIRGEINRLRSMDEDQLYVAAKEIQAPYDLV 199          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_FRAP2 (Pyridoxal biosynthesis lyase pdxS OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.598e-43
Identity = 94/190 (49.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  310 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWV 861
            ++K GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +    S+PVM++ R+GHFVEAQILES+G+D+IDESEVL  AD+ N I K NF+ PFVCGC NLGEALRRI EGAA+IR +G+   +G  VE V+ +R V  D   +      E +  AK  +   D V
Sbjct:    5 NLKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVTSIPVMAKARIGHFVEAQILESLGVDFIDESEVLSPADDLNHIAKDNFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKGADQSELMAIAKNMQAPYDLV 193          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_CORGL (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium glutamicum GN=pdxS PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 9.923e-43
Identity = 97/211 (45.97%), Postives = 137/211 (64.93%), Query Frame = 1
Query:  271 GGSAITDAKKN---PFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWVLKLTN 876
            G S +T+ ++       +K GLA ML+GG I++V + EQA+IAE AGA ++M  E       S+ G+ RM DP L++ +  AVS+PVM++ R+GHFVEAQ+LE++G+D+IDESEVL  AD  + INK  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G   E V+++R + GD   L ++  DE    AK  +   D V ++ +
Sbjct:   15 GSSVMTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPYDLVREVAS 224          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_CLOCE (Pyridoxal biosynthesis lyase pdxS OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.923e-43
Identity = 92/192 (47.92%), Postives = 132/192 (68.75%), Query Frame = 1
Query:  307 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWVL 864
            + +   LAQML+GG I++V + ++A+IA+ AGA ++M  E  PS      G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQ+LE++ +DYIDESEVL  ADE   I+KH F+ PFVCG +NLGEALRRI EGA+MIR +G+   +G  VE V+++R V  + R + +    E +T AK      D +L
Sbjct:    5 YQLNKNLAQMLKGGVIMDVVNAKEAEIAQKAGAVAVMALERVPSDIRKAGGVARMSDPKMIKDIQSAVSIPVMAKVRIGHFVEAQVLEALSIDYIDESEVLTPADEEFHIDKHTFKVPFVCGAKNLGEALRRISEGASMIRTKGE-AGTGNVVEAVRHMRTVTNEIRKVQSASKQELMTIAKEFGAPYDLIL 195          
The following BLAST results are available for this feature:
BLAST of EY659385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_CLOAB8.975e-4452.27Pyridoxal biosynthesis lyase pdxS OS=Clostridium a... [more]
PDXS_METLZ1.172e-4350.27Pyridoxal biosynthesis lyase pdxS OS=Methanocorpus... [more]
PDXS_SYNAS1.531e-4351.35Pyridoxal biosynthesis lyase pdxS OS=Syntrophus ac... [more]
PDX1_NEUCR1.531e-4352.33Probable pyridoxine biosynthesis protein pdx-1 OS=... [more]
PDXS_BACCN2.611e-4350.00Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDX1_CERNC3.410e-4353.33Pyridoxine biosynthesis protein PDX1 OS=Cercospora... [more]
PDXS_CORDI4.454e-4350.79Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_FRAP27.598e-4349.47Pyridoxal biosynthesis lyase pdxS OS=Francisella p... [more]
PDXS_CORGL9.923e-4345.97Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_CLOCE9.923e-4347.92Pyridoxal biosynthesis lyase pdxS OS=Clostridium c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659385 ID=EY659385; Name=EY659385; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGTGCTCTTCAACGCTTGGAAAGGTGTCGAAATTTCTACAC
TAATCAATCAATTCCCCACCGACTAACCCCACCTTCGAAGCTCTTCAGAA
CCTTCTCGAACTCGCCCCAATCCTCGCTCTCCCTTCAATTTTATAAACCC
CTTTCCACAAAAAGAAACCCAGTACTCGATCAAACGATTCAATTACTACG
CTTCTTGCATCAGTGAGACATTTTTGCAAACGCCTTTGCAATGGCCGAAG
ACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTACTGACGCCAAGAAA
AACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATGCTACGTGGCGGGGC
CATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGATCGCCGAAGCAGCTG
GCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGCCCGGCATTAAGCGC
ATGCCGGATCCTTCTCTTGTTAAAAGCGTTAAACGCGCCGTTTCAGTCCC
CGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGAAGCGCAGATTCTTG
AAAGTATTGGGCTCGATTACATTGACGAGAGTGAGGTTTTAGGATTAGCT
GATGAATATAATTTTATTAACAAACATAACTTTAGGTTCCCGTTTGTGTG
TGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAATTAGAGAAGGAGCTG
CTATGATAAGAATACAGGGGGATTTGTTAAATTCTGGTAAATATGTCGAG
ACTGTTAAAAATGTGAGGGTCGTTATGGGAGATATNCGAATTTTGAATAA
CATGGGATGAGATGAGGGTCTCACGTTTGCTAAGAGATAGCGGCTCCGTA
TGGATTGGGTGCTCAAACTAACAAATGGGGAGGGNTGCCGTGGGTGCATT
TGCTGCAGGAGTGGTGTG
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