EY659385

Overview
NameEY659385
Unique NameEY659385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_STRP2 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.693e-42
Identity = 90/185 (48.65%), Postives = 131/185 (70.81%), Query Frame = 1
Query:  298 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G  V+ V+++R++  + R + N+  DE    AK
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAK 186          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_DESHY (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain Y51) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.693e-42
Identity = 94/192 (48.96%), Postives = 131/192 (68.23%), Query Frame = 1
Query:  307 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWVL 864
            + +   LAQML+GG I++V++ EQAKIAEAAGAC++M  E       +  G+ RM DP ++K +  AVS+PVM++ R+GHFVEAQILE++ +DYIDESEVL  AD+   I+K  F+ PFVCG ++LGEALRRI EGAAMIR +G+   +G  V+ V+++R++      L  M  DE    AK  ++  D VL
Sbjct:    6 YELNKELAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGE-PGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPYDLVL 196          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_DESHD (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.693e-42
Identity = 94/192 (48.96%), Postives = 131/192 (68.23%), Query Frame = 1
Query:  307 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWVL 864
            + +   LAQML+GG I++V++ EQAKIAEAAGAC++M  E       +  G+ RM DP ++K +  AVS+PVM++ R+GHFVEAQILE++ +DYIDESEVL  AD+   I+K  F+ PFVCG ++LGEALRRI EGAAMIR +G+   +G  V+ V+++R++      L  M  DE    AK  ++  D VL
Sbjct:    6 YELNKELAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGE-PGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPYDLVL 196          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_GEOKA (Pyridoxal biosynthesis lyase pdxS OS=Geobacillus kaustophilus GN=pdxS PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.211e-42
Identity = 91/181 (50.28%), Postives = 129/181 (71.27%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR 837
            +K G+A+M +GG I++V + EQAKIAEAAGA ++M  E       +  G+ RM DP++++ V  AVS+PVM++VR+GH+VEA++LE++G+DYIDESEVL  ADE   I+K  F  PFVCGCR+LGEA RRI EGA+M+R +G+   +G  VE V+++R V    R + NM  DE +  AK+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQ 188          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.887e-42
Identity = 90/203 (44.33%), Postives = 134/203 (66.01%), Query Frame = 1
Query:  277 SAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAKR*RLRMDWVLK 867
            SA ++ +    ++K GLAQML+GG I++V + +QA++AE AGAC++M  E          G+ RM DP  +K +   V+VPVM++ R+GHF EAQIL+++G+D+IDESEVL  AD+ N ++K  F  PFVCG R+LGEALRRI EGAAMIR +G+   +G  VE V++ R +  + R+   +   E   +AK+  + +D + K
Sbjct:    7 SATSETQTGTMTVKTGLAQMLKGGIIMDVINADQARVAEEAGACAVMALEKVPADIRKDGGVARMADPRKIKEIMDTVTVPVMAKCRIGHFAEAQILQNLGVDFIDESEVLSPADDENHVDKQPFNVPFVCGARSLGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHARQINREIRVAQCLSSAELYGYAKQLGVPLDLLQK 208          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_DEIRA (Pyridoxal biosynthesis lyase pdxS OS=Deinococcus radiodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.771e-42
Identity = 89/190 (46.84%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  283 ITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +T+ +     +K G A+M +GG I++V + +QA+IAEAAGA ++M  E          G+ RM DP +++ +  AVS+PVM++VR+GH VEAQIL++IG+D+IDESEVL  ADE   I K +F+ PFVCG +NLGEALRR+ EGA+MIR +G+   +G  VE V++ R V+GD R + +   +E +T A+
Sbjct:   12 MTEQQTGTPQLKQGFAEMFKGGVIMDVVTADQARIAEAAGATAVMALERVPADIRKDGGVARMSDPKMIREIMAAVSIPVMAKVRIGHVVEAQILQAIGVDFIDESEVLTPADEQFHILKRDFKVPFVCGAKNLGEALRRVGEGASMIRTKGE-AGTGNVVEAVRHARAVLGDIRAVQSRPAEELMTVAR 200          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_BACHD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus halodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.771e-42
Identity = 90/180 (50.00%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LE++G+DYIDESEVL  ADE   +NK +F  PFVCG R+LGEA RRI EGA+MIR +G+   +G  VE V+++R++    R ++NM  DE +T AK
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKCRIGHIVEARVLEALGVDYIDESEVLTPADEVYHLNKRDFTVPFVCGARDLGEAARRIGEGASMIRTKGE-PGTGNIVEAVRHMRMMQAQIRKVSNMSTDELMTEAK 187          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_ANOFW (Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.771e-42
Identity = 90/180 (50.00%), Postives = 129/180 (71.67%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +K G+A+M +GG I++V + EQAKIAEAAGA ++M  E       +  G+ RM DP++++ V +AVS+PVM++ R+GH+VEA++LE++G+DYIDESEVL  ADE   I+K  F  PFVCGCR+LGEA RRI EGA+M+R +G+   +G  VE V+++R V    R + +M  DE +T AK
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMKAVSIPVMAKARIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQVRKVVSMSEDELMTEAK 187          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_METVS (Pyridoxal biosynthesis lyase pdxS OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.925e-42
Identity = 91/160 (56.88%), Postives = 119/160 (74.38%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVV 774
            +K G A+M++ G +++V++VEQAKIAE AGA ++M  E  P+    + G+ RM DP ++  +K AVS+PVM++ R+GHFVEAQ+LESIG+D IDESEVL  ADE N INK  F  PFVCG RNLGEALRRI EGAAMIR +G+   +G  VE VK++R V
Sbjct:    9 LKRGFAKMVKHGVVMDVTNVEQAKIAEEAGAAAVMALERVPADIRVQGGVARMSDPDMILEIKDAVSIPVMAKARIGHFVEAQVLESIGVDMIDESEVLTPADEINHINKKAFTAPFVCGARNLGEALRRIDEGAAMIRTKGE-AGTGNVVEAVKHMRAV 167          
BLAST of EY659385 vs. ExPASy Swiss-Prot
Match: PDXS_BACAN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.925e-42
Identity = 89/180 (49.44%), Postives = 129/180 (71.67%), Query Frame = 1
Query:  313 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGKYVETVKNVRVVMGDXRILNNMG*DEGLTFAK 834
            +K G+A+M +GG I++V + EQAKIAE AGA +IM  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +G  VE V+++R V  + R + ++  DE +T+AK
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAK 188          
The following BLAST results are available for this feature:
BLAST of EY659385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_STRP21.693e-4248.65Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_DESHY1.693e-4248.96Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_DESHD1.693e-4248.96Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_GEOKA2.211e-4250.28Pyridoxal biosynthesis lyase pdxS OS=Geobacillus k... [more]
PDX1_SUBDO2.887e-4244.33Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_DEIRA3.771e-4246.84Pyridoxal biosynthesis lyase pdxS OS=Deinococcus r... [more]
PDXS_BACHD3.771e-4250.00Pyridoxal biosynthesis lyase pdxS OS=Bacillus halo... [more]
PDXS_ANOFW3.771e-4250.00Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus... [more]
PDXS_METVS4.925e-4256.88Pyridoxal biosynthesis lyase pdxS OS=Methanococcus... [more]
PDXS_BACAN4.925e-4249.44Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659385 ID=EY659385; Name=EY659385; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGTGCTCTTCAACGCTTGGAAAGGTGTCGAAATTTCTACAC
TAATCAATCAATTCCCCACCGACTAACCCCACCTTCGAAGCTCTTCAGAA
CCTTCTCGAACTCGCCCCAATCCTCGCTCTCCCTTCAATTTTATAAACCC
CTTTCCACAAAAAGAAACCCAGTACTCGATCAAACGATTCAATTACTACG
CTTCTTGCATCAGTGAGACATTTTTGCAAACGCCTTTGCAATGGCCGAAG
ACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTACTGACGCCAAGAAA
AACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATGCTACGTGGCGGGGC
CATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGATCGCCGAAGCAGCTG
GCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGCCCGGCATTAAGCGC
ATGCCGGATCCTTCTCTTGTTAAAAGCGTTAAACGCGCCGTTTCAGTCCC
CGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGAAGCGCAGATTCTTG
AAAGTATTGGGCTCGATTACATTGACGAGAGTGAGGTTTTAGGATTAGCT
GATGAATATAATTTTATTAACAAACATAACTTTAGGTTCCCGTTTGTGTG
TGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAATTAGAGAAGGAGCTG
CTATGATAAGAATACAGGGGGATTTGTTAAATTCTGGTAAATATGTCGAG
ACTGTTAAAAATGTGAGGGTCGTTATGGGAGATATNCGAATTTTGAATAA
CATGGGATGAGATGAGGGTCTCACGTTTGCTAAGAGATAGCGGCTCCGTA
TGGATTGGGTGCTCAAACTAACAAATGGGGAGGGNTGCCGTGGGTGCATT
TGCTGCAGGAGTGGTGTG
back to top