EY659377

Overview
NameEY659377
Unique NameEY659377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659377_ssr21 microsatellite EY659377_ssr21:21..35. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659377_ssr127 microsatellite EY659377_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAAN (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain N315) GN=icd PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAAM (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=icd PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAAC (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain COL) GN=icd PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_AQUAE (Isocitrate dehydrogenase [NADP] OS=Aquifex aeolicus GN=icd PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 62/215 (28.84%), Postives = 99/215 (46.05%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLEH----QXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHT-------------------QSNIMQKTDGLFLKWCPEVAQ 837
            GDGIGPEI +++  +  TA          + W E   G + + +T   L  E+L+ ++ + VG+KGP+ TP+GKG RS+N  LR+  + Y+ VRP Y + G  T     + V+L+  RENT+  Y+G+E                            ++  T++   E K+  H                    + NIM+ T+G F+ W  EVA+
Sbjct:   46 GDGIGPEITQAMLLIINTAVEKTYNGSKKIYWVELLAGDKAEEKTGERLPQETLDVLKESIVGIKGPLGTPVGKGVRSINSALRRAFDYYSAVRPVYWM-GQATPIPNPERVDLVVFRENTDDVYAGVEFFAGTPEAKKVREFLIKEMGAKEEGFPEDVGITVKPMSEFKTKRHVRKALRYALENNKKNVAVIGKGNIMKATEGAFINWAFEVAE 259          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH4_ARATH (Putative isocitrate dehydrogenase [NAD] subunit-like 4 OS=Arabidopsis thaliana GN=IDH4 PE=5 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.072e-15
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  301 IGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSI--LHTQSNIMQKTDGLFLKWCPEVAQ 837
            I   +  +V QV    + PV +E +     I  +  + LTWE ++S+R+NKV L G +   +  G        RKEL+L+A++  C++L G  +R+++V+++ IRENTEGEY+G EH+                         F      + K +  +H      +  D  FL+ C EVA+
Sbjct:    8 IDSNVTNAVHQVMDAMQAPVYFETYI----IKGKNMNHLTWEVVDSIRKNKVCLNGRVNNSLCGG-------ARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKKVTAVHNNGKYEKLADAFFLESCQEVAK 177          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_HELPY (Isocitrate dehydrogenase [NADP] OS=Helicobacter pylori GN=icd PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.022e-14
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGT----------EIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ 654
            GDGIG +I  ++ +V  +A       E  + W E +VG           E+ P  Q  L  +++E++   KV +KGP+ TPIG+G RSLN+ LR++++LY  +RP   Y  P        V+++  REN+E  Y+G+E Q
Sbjct:   37 GDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKFKDYKELSPEEQWLLP-DTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGSPSPVKEPQKVDMVIFRENSEDIYAGIEWQ 175          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_HELPJ (Isocitrate dehydrogenase [NADP] OS=Helicobacter pylori J99 GN=icd PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.022e-14
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGT----------EIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ 654
            GDGIG +I  ++ +V  +A       E  + W E +VG           E+ P  Q  L  +++E++   KV +KGP+ TPIG+G RSLN+ LR++++LY  +RP   Y  P        V+++  REN+E  Y+G+E Q
Sbjct:   37 GDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKFKDHKELSPEEQWLLP-DTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGSPSPVKEPQKVDMVIFRENSEDIYAGIEWQ 175          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_COXBU (Isocitrate dehydrogenase [NADP] OS=Coxiella burnetii GN=icd PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.641e-14
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDP--RTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLE 648
            GDGIG +IA  +K V   A       +  ++W E Y G +        ++L  E+LE+++  +V +KGP+ TP+G G RSLN+ LR++L+LY  +RP     G  +     + VN++  REN+E  Y+G+E
Sbjct:   44 GDGIGIDIAPVMKNVVDAAVEKSYAGKRKIEWMEIYAGEKATKVYGKDNWLPDETLEAIKEYQVAIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFTGVPSPVKTPEKVNMVIFRENSEDIYAGIE 174          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: LEU3_METTH (3-isopropylmalate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=leuB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.450e-14
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  283 LFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLF 810
            + PGDGIG E+ E+   +  T ++ +++     G     RT + L  E+LE+V   +  L G      G+    + + LR+E +L+AN+RP  SLPG    Y D++ + +RENTE  Y G E                           +  +   ++ + +H ++N+++KTDG+F
Sbjct:    8 VIPGDGIGVEVMEAALHILNTLDLDLEFIHADAGDACLKRTGTALPEETLEAVGEARATLFGAA----GESAADVIVRLRREFDLFANLRPVKSLPGVPCLYPDLDFVIVRENTEDLYVGDEEYTPEGAVAKRIITRTASRRISQFAFQYAQKEGMQKVTAVH-KANVLKKTDGIF 178          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: LEU3_ARCFU (3-isopropylmalate dehydrogenase OS=Archaeoglobus fulgidus GN=leuB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.450e-14
Identity = 52/186 (27.96%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  283 LFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + PGDGIG E+ E+   +    ++P ++  +  G E   +    L  E+LE+ R++   L G      G+    + + LR+EL  +ANVRP  ++ G +  Y  ++++ +RENTE  Y G E                              R   ++ + LH ++N+M+KT GLF   C EVA++
Sbjct:    6 VIPGDGIGKEVMEAAMLILEKLDLPFEYSYYDAGDEALEKYGKALPDETLEACRKSDAVLFGAA----GETAADVIVRLRRELGTFANVRPAKAIEGIECLYPGLDIVVVRENTECLYMGFEFGFGDVTEAIRVITREASERIARYAFELAKREGRKKVTALH-KANVMKKTCGLFRDVCREVAKD 186          
The following BLAST results are available for this feature:
BLAST of EY659377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IDH_STAAN9.699e-1737.21Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAM9.699e-1737.21Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAC9.699e-1737.21Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_AQUAE2.822e-1628.84Isocitrate dehydrogenase [NADP] OS=Aquifex aeolicu... [more]
IDH4_ARATH1.072e-1529.28Putative isocitrate dehydrogenase [NAD] subunit-li... [more]
IDH_HELPY2.022e-1435.00Isocitrate dehydrogenase [NADP] OS=Helicobacter py... [more]
IDH_HELPJ2.022e-1435.00Isocitrate dehydrogenase [NADP] OS=Helicobacter py... [more]
IDH_COXBU2.641e-1435.88Isocitrate dehydrogenase [NADP] OS=Coxiella burnet... [more]
LEU3_METTH3.450e-1427.843-isopropylmalate dehydrogenase OS=Methanobacteriu... [more]
LEU3_ARCFU3.450e-1427.963-isopropylmalate dehydrogenase OS=Archaeoglobus f... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659377 ID=EY659377; Name=EY659377; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGAAAAAAAAAAATAATAATAATAATAAAATTATATTCTCA
CCTTCAAAAGTTGCAATTTTTATTTTGCTTTTTTCTTTTTCTTTTTCATA
AAAATCACATCAAACGGAGAAGAAAAAAGAAGAAGAAGGATCAATCAATG
GCAACGCAGCTGCTGAGACGAGTCCTGGGAAGCCGATCGCGCCAGATCCT
CTCAACCACAAACCCCAACCCTAATTTAGCTTTGCCTATAGCCAGGGCCT
TCTCCTCCGATATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGA
ATCGGCCCCGAGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGA
AGTGCCAGTTGATTGGGAGGAGCATTATGTTGGGACTGAAATAGATCCTA
GAACACAAAGTTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAAC
AAGGTGGGCTTGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCG
TTCATTGAATCTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTA
GGCCTTGCTACAGCCTCCCTGGGTATAAAACTCGCTATGATGATGTGAAT
CTTATCACTATCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACA
TCAAGTGGNTGAGAAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCA
GGCTAGTTTGAGAAGTGCTGAATATGCNGTTCACTATGCGAAGACCATGG
GAAGAGAAGAGTATCTTGCATACACAAAGCAATATTATGCAGAAAACTGA
TGGGCTTTTTTTGAAGTGGTGTCCTGAAGTTGCCCAGAATACCCTGAGAT
AACATATGAAGAAAGTGTATCAACATTGCTGGATGATGCTTGGGAGAATC
CAACGGCTTCGATGGGTGGAATGGCTAACTCCATGGGAA
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