EY659372

Overview
NameEY659372
Unique NameEY659372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 324
            P+  PF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K++ A+   TAR+WT+ YAM
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.208e-28
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 327
            P   P+ GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:   44 PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.208e-28
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 327
            P   P+ GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:   44 PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 321
            P   PF  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +KTDR  +  TA+ WT+KYA
Sbjct:   41 PEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 321
            P   PF GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +    AR WT+ YA
Sbjct:   42 PLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 321
            P   P+ GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TDR K++  A+ WT ++A
Sbjct:   75 PSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 321
            P   P+ GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  DR  +  TA  WT+ YA
Sbjct:   42 PPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    1 PRVRPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EGL 339
            P   P+ GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA    G+
Sbjct:   43 PEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGV 156          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   13 PFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 324
            P+ GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K +RA + + A+ WT+K+A+
Sbjct:   45 PYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of EY659372 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   13 PFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 321
            P+ GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + +TAR WT+ +A
Sbjct:   46 PYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
The following BLAST results are available for this feature:
BLAST of EY659372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBE2N_RAT9.696e-2952.78Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC36_ARATH8.208e-2853.21Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH8.208e-2853.21Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBCB_DICDI5.321e-2753.70Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBE2N_DICDI6.949e-2753.27Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
COP10_ARATH6.949e-2746.73Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC1_YEAST3.449e-2650.93Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC1_SCHPO5.883e-2646.49Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2T_XENLA1.310e-2550.00Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC27_ARATH8.494e-2550.96Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-D10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659372 ID=EY659372; Name=EY659372; organism=Citrus sinensis; type=EST; length=557bp
CCACGCGTCCGCCCATTTGCTGGCGGTGTATTTCTTGTATCCATTCATTT
CCCACCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGG
TTTTCCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTC
AAGGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAAT
TTGCTCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGA
TTGCTCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGA
TCCTGGACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCC
CCTGAGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAG
TTTGTTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTT
AAAAGGTTTTATGTGGGGTTACTTTCAAATTTAGCATTGTTCTTCAATAC
TTAAATTATAATTTACTGCAGAATTGAGCTGCCTTTGCCTTTAAAAAAAA
AAAAAAA
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