EY659370

Overview
NameEY659370
Unique NameEY659370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.104e-33
Identity = 82/197 (41.62%), Postives = 110/197 (55.84%), Query Frame = 3
Query:  261 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQLR 833
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLG + DPD     K +   +GRLAMF   G  ++ +   KG ++
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQ 231          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.104e-33
Identity = 83/195 (42.56%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+      ++ D L+PGG FDPLG ++DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPL 240          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.666e-33
Identity = 84/195 (43.08%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D ++PGG FDPLG + DPD     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.666e-33
Identity = 82/195 (42.05%), Postives = 115/195 (58.97%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G   ++ED ++PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.706e-33
Identity = 83/195 (42.56%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.706e-33
Identity = 83/195 (42.56%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLG + DP+     + +   +GRLAMF M G  ++ +   KG L
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.137e-32
Identity = 89/198 (44.95%), Postives = 114/198 (57.58%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 84/197 (42.64%), Postives = 111/197 (56.35%), Query Frame = 3
Query:  261 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQLR 833
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+  G   E  D L+PG  FDPLG + DPD     K +   +GRLA F M G  ++ +   KG ++
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQ 228          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 83/195 (42.56%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+  A++VL+G  E YR+  G   E  DK++PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 83/195 (42.56%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLG + D +     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238          
The following BLAST results are available for this feature:
BLAST of EY659370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2_CHLMO5.104e-3341.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_NICPL5.104e-3342.56Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2_PHYPA6.666e-3343.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU6.666e-3342.05Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_PETSP8.706e-3342.56Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PETSP8.706e-3342.56Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_LEMGI1.137e-3244.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.939e-3242.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP1.939e-3242.56Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_HORVU1.939e-3242.56Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659370 ID=EY659370; Name=EY659370; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGAAAGAAGCATGCAGCAGCAACACTCTGAAGATGGCTTCA
TTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCT
TGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTG
CATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAA
GCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGA
AGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGG
GTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCC
GGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTT
CAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTG
GTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAAC
TGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGG
AAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTG
CTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATC
ACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGA
CCCACTGGGATTTAGCAAGGATCCTGACCATTTGCATTGCTAAAAGTGAA
GGAGATCAGATGGAAGACTTGCCATGTTTTGCATGCTTGGNNTTCTTCTC
AAGCTTATGTCACAGGTGAAAGGTCAGTTGAGAACTTGCTAACATCTCNT
GATCCTTTTGCCAAACTTGCTACCGGAT
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