EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12632 contig Csv1_Contig12632:598..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAAB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   + +   PLGSCTMK N          P F+  HP    DQ QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   53 ELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAA9 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus aureus (strain JH9) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   + +   PLGSCTMK N          P F+  HP    DQ QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   53 ELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAA8 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   + +   PLGSCTMK N          P F+  HP    DQ QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   53 ELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAA3 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus aureus (strain USA300) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   + +   PLGSCTMK N          P F+  HP    DQ QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   53 ELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAA2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus aureus (strain JH1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   + +   PLGSCTMK N          P F+  HP    DQ QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   53 ELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAA1 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 85/203 (41.87%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   + +   PLGSCTMK N          P F+  HP    DQ QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   53 ELDLVRHYTELSNKNFGVDNGFYPLGSCTMKYNPKINEKVARIPGFSESHPLQDEDQVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHENNGEGHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHNAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BACWK (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.221e-41
Identity = 84/204 (41.18%), Postives = 129/204 (63.24%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L ++   +     PLGSCTMK N         +  FANIHP       QG  E+  +L E L  ITG D+ +LQP AGA GE+ GLM+IRAYH+A GD +R   I+P SAHGTNPA+A + G + ++V ++  G +++++L++      +  + LM+T P+T G++EE I E+ +I+H+ GG++Y DGAN+NA
Sbjct:   52 SELDIMRHYTALSNRNHGVDSGFYPLGSCTMKYNPKINENVARFAGFANIHPLQDEKTVQGAMELMYDLQEHLIEITGMDTVTLQPAAGAHGEWTGLMLIRAYHEANGDFNRTKVIVPDSAHGTNPASATVAGFETITVKSNEHGLVDLDDLKRVV---NEETAALMLTNPNTLGLFEENILEMAEIVHNAGGKLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEGJ (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 93/244 (38.11%), Postives = 136/244 (55.74%), Query Frame = 2
Query:   32 VPFTAASLAEEVETAIPSGLTRES----PYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            V +T     E++E  IP  + R+S    P L++P   K++T    + Y          +   + PLGSCTMK N          P  A IHP+      QG  ++   L +WL  ITG D F+LQP AGA GE+ G+ +IR YH   G+  R+  ++P SAHGTNPA+AAM G K++ + ++  G +++E L  A     +  + LM+T P+T G++E+ I EI KI+H  GG +Y DGAN+NA
Sbjct:   21 VGYTLPKPIEDLEVEIPEKIRRKSKLDLPELSEPEIVKHYTRLSEMNY---------GVDSGIYPLGSCTMKYNPKINEEMAAHPGVAYIHPYQDERTVQGALKIMWELEQWLKEITGMDRFTLQPAAGANGEFTGVSIIRTYHIDNGEPQRDEMLVPDSAHGTNPASAAMAGFKVIEIPSNENGTVDLEALENAV---GERTAGLMLTNPNTLGIFEDEILEIAKIVHKAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BACA2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.947e-41
Identity = 91/230 (39.57%), Postives = 134/230 (58.26%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E+E+ +P    R+       V     +E +++R+   L  +   +     PLGSCTMK N            F+ IHP    D  QG  E+  +L   L  ITG D  +LQP AGA GE+ GLM+IRAYH+ARGD  R   I+P SAHGTNPA+A + G + ++V ++  G ++IE+L++A     +  + LM+T P+T G++EE I E+ +I+H  GG++Y DGAN+NA
Sbjct:   31 ELESLLPGDYIRDEDAKLPEV-----SELDIMRHYTALSKRNHGVDSGFYPLGSCTMKYNPKLNEKIARIAGFSAIHPLQDEDTVQGALELLYDLSGHLEEITGMDEVTLQPAAGAHGEWTGLMMIRAYHEARGDFGRTKVIVPDSAHGTNPASATVAGFETITVKSNEHGLVDIEDLKRAV---NEETAALMLTNPNTLGLFEENITEMAEIVHQAGGKLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAS1 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.439e-41
Identity = 84/203 (41.38%), Postives = 125/203 (61.58%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   +     PLGSCTMK N          P FA  HP     Q QG  E+ ++L E L  ITG D  +LQP AGA GE+  LM+ +A+H+  G+ HR+  I+P SAHGTNPA+AA  G K V+V ++ +G ++I++L++      +N + +M+T P+T G++E+ I +I  I+H+ GG +Y DGAN+NA
Sbjct:   54 ELDLVRHYTELSNKNFGVDSGFYPLGSCTMKYNPKINEKIARIPGFAESHPLQDESQVQGSLEIIHSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAFHQKNGEGHRDEVIVPDSAHGTNPASAAFAGFKAVTVKSNERGEVDIDDLKRVV---NENTAAIMLTNPNTLGIFEKNIMDIRNIVHEAGGLLYYDGANLNA 253          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_STAAB2.221e-4141.87Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAA92.221e-4141.87Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAA82.221e-4141.87Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAA32.221e-4141.87Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAA22.221e-4141.87Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAA12.221e-4141.87Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACWK2.221e-4141.18Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEGJ2.900e-4138.11Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACA24.947e-4139.57Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAS18.439e-4141.38Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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