EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12632 contig Csv1_Contig12632:598..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BACLD (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.439e-40
Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L  +   +     PLGSCTMK N          P F+ IHP       QG  E+  +L E L  ITG D  +LQP AGA GE+ GLM+IRA+H+A GDH R   I+P SAHGTNPA+A + G + V+V ++  G +++E+L++  +   +  + LM+T P+T G++EE I E+ +I+H  GG++Y DGAN+NA
Sbjct:   52 SELDIMRHYTALSRRNHGVDSGFYPLGSCTMKYNPKINEKIARIPGFSAIHPLQDEATVQGALELLYDLSEHLEEITGMDEVTLQPAAGAHGEWTGLMMIRAFHEANGDHKRTKVIVPDSAHGTNPASATVAGFETVTVKSNDDGLVDLEDLKRVVD---EETAALMLTNPNTLGLFEENILEMAEIVHSAGGKLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_SYNWW (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.880e-40
Identity = 90/243 (37.04%), Postives = 138/243 (56.79%), Query Frame = 2
Query:   20 GGKSVPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            GG  +P    +  E      P  L  E+P L +       +E E++R+   L  +   + +   PLGSCTMK N          P FAN+HP+ P +  QG  E+     +  C I G D F+LQP AGA GE  GLM+I+AYH+ R D  R   ++P SAHGTNPATA + G ++V V ++ +G +++++L+    +    ++ LM+T P+T G++E+ I+EI  ++H +GG +Y DGAN+N
Sbjct:   14 GGFFLPPCDVAEIEPAAEINPEFLRAEAPLLPEL------SEVEVVRHYVELSQRAYGVDNGFYPLGSCTMKYNPKINEWAARLPGFANLHPYQPEESVQGALELLYRAEKLCCEIGGMDRFTLQPAAGAHGELTGLMIIKAYHQHRQDLARTKILVPDSAHGTNPATAHVLGFEVVEVKSNEEGLVDLQDLKACMSS---EVAGLMLTNPNTLGLFEKEIEEIATVVHADGGLLYYDGANLN 247          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_LEGPL (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Legionella pneumophila (strain Lens) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.880e-40
Identity = 83/204 (40.69%), Postives = 125/204 (61.27%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L  K  S+  +  PLGSCTMK N        + P F N HP A  +++QG+ E    L  ++  ITG    SL P AG+ GE+AG+ +I+AYH++RGD  R+  +IP +AHGTNPA+A MCG K+V + T   G+I+++EL++         + +M+T PST G++   I EI  ++H  GG +Y DGAN+NA
Sbjct:   43 SELQVVRHFTCLSQKNFSIDTNFYPLGSCTMKYNPRGVHKAASLPGFINRHPLAMDNESQGFLETLYKLQNYISEITGMPGVSLTPMAGSQGEFAGVAMIKAYHQSRGDTARDEILIPDAAHGTNPASAVMCGFKVVEIATAPDGDIDLDELKRKV---GPRTAGIMLTNPSTLGLFMRQIKEIASLVHQAGGLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BACSK (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.880e-40
Identity = 91/232 (39.22%), Postives = 133/232 (57.33%), Query Frame = 2
Query:   59 EEVETAIPSGLTRES-PYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            + +E+ +P    RE  P L +       +E +++R+   L  +   +     PLGSCTMK N          P   ++HP+ P +Q QG  +M  +L   L  ITG D  +LQP AGA GE+ GLM+IRAYH+A GD  R   ++P SAHGTNPA+A + G + V+V T+  G ++++ LR   E   +  + LM+T P+T G++E  I E+  IIH  GG++Y DGAN NA
Sbjct:   31 QPLESLLPEAYVREEEPELPEV------SELQIMRHYTALSKRNHGVDSGFYPLGSCTMKYNPKINEDIARLPGLVHVHPYQPEEQVQGSLKMLYSLQTALAEITGMDEVTLQPAAGAHGEWTGLMMIRAYHEANGDKKRTKVVVPDSAHGTNPASATVAGFESVTVRTNEAGLVDLDHLR---EVVNEETAALMLTNPNTLGLFEADIQEMADIIHRAGGKLYYDGANSNA 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_PROA2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.207e-40
Identity = 97/240 (40.42%), Postives = 140/240 (58.33%), Query Frame = 2
Query:   47 ASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAXGRLT 766
            ASL  E + AI   L  E    T+P       E E++R+   L +    +   M PLGSCTMK N            F +IHP  PA+ AQG  ++   LGE L  I G  + +LQP AGA GE  G+++IR YH +R      + ++  SAHGTNPA+AA+ G  I+SV ++A+G  +IE+L+   +   +N++ LM+T P+T G++E+ I EI +++HDNG  +YMDGANMNA   +T
Sbjct:   20 ASLDIEPQPAI--NLIPEKFLRTEPADLPEVPESEVVRHFIRLSNLNHHVDKDMYPLGSCTMKYNPKINDQTADIAGFTSIHPLQPAETAQGTLQLMYELGEMLREIAGMAAITLQPAAGAHGELTGILMIRKYHDSRASKRTKLLVVD-SAHGTNPASAALVGYDILSVKSNAEGRTDIEDLKAKLD---ENVAALMLTNPNTIGLFEKDIKEIEQLVHDNGSLLYMDGANMNALMGIT 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEAB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermosipho africanus (strain TCF52B) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.188e-40
Identity = 87/231 (37.66%), Postives = 135/231 (58.44%), Query Frame = 2
Query:   59 EEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            ++ E  +P  L R+S      V     +E +++R+   L +K  S+     PLGSCTMK N        ++  F+ IHPF P +  QG  ++  +L E LC ITG D  +L P+AGA GE  G+++ RAYH +RGD  R   I+P SAHGTNPA+A M G  ++ + +   G +++ EL K  +   + ++ +M+T P+T G++E+ I +I ++ HD G  +Y DGAN+NA
Sbjct:   22 KDYEINLPEHLLRKSLPRLPQV-----SEVDVVRHYTNLSAKNYSVDVGFYPLGSCTMKYNPKVNEKVASFEEFSMIHPFQPHETVQGALKLMYDLKEMLCEITGMDDMTLIPSAGAHGELTGILISRAYHLSRGDTKRTKVIVPDSAHGTNPASARMAGFDVIEIKSGPDGRVDLNELEKVLD---ETVAVIMLTNPNTLGLFEKDILKIAQMAHDKGALLYYDGANLNA 244          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_NITEU (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Nitrosomonas europaea GN=gcvPB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.188e-40
Identity = 95/238 (39.92%), Postives = 131/238 (55.04%), Query Frame = 2
Query:   38 FTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            ++ A      +  IP  L R+S  L   V     +E + +R+   L  K  S+     PLGSCTMK N          P F + HP AP D  QG+      L E L  ITG  + SL   AGA GE  G+ +IRAYH+A GD  R   IIP +AHGTNPATA MCG K++ + T+  G+++++ L+ A        + LM+T PST GV+E+ + E+ +I+H  GG +Y DGAN+NA
Sbjct:   14 YSQAPATRPAKNNIPDHLKRKSTPLLPEV-----SEMDTVRHYTRLSQKNFSIDTEFYPLGSCTMKYNPRACNSLAMLPQFLSRHPLAPEDTGQGFLACMYELQEILKDITGMAAVSLTSMAGAQGELIGITMIRAYHEAHGDTGRTEIIIPDAAHGTNPATAVMCGYKVIEIPTNRDGDVDMDALKAAV---GPKTAGLMLTNPSTLGVFEKKVAEMSRIVHAAGGLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THIDA (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.219e-39
Identity = 89/204 (43.63%), Postives = 119/204 (58.33%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L  K  S+     PLGSCTMK N          P F   HP +P +  QG+      L E L  +TG    S+ P AGA GE+AG+ +IRAYH A+GD  R   I+P +AHGTNPATA MCG  +  + TDA G +++  L+ A        + LM+T PST GV+E+ I EI KI+HD GG +Y DGAN+NA
Sbjct:   43 SELDVVRHYTRLSQKNFSIDTQFYPLGSCTMKYNPRACNSLAMLPQFLARHPASPDETGQGFLASMFELQEMLKDVTGMAGVSMAPMAGAHGEFAGVAMIRAYHDAKGDAARREIIVPDAAHGTNPATATMCGYTVKEIPTDATGAVDLAALKAAV---GPQTAGLMLTNPSTLGVFEKTIAEIQKIVHDAGGLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEVO (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermoplasma volcanium GN=gcvPB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.545e-39
Identity = 93/241 (38.59%), Postives = 141/241 (58.51%), Query Frame = 2
Query:   50 SLAEEV-ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAXGRLTA 769
            SL+E+V E+ +P  L R+   L +       +E++++R+   L     ++   + PLGSCTMK N            F NIHPF P +  QG   +  +L E+L  I+  D+ SLQP AGA GE+ G+++++ Y + +G+  R   IIP SAHGTNPA+A M G  +V V +D KG +++E LR A        +  M+T P+T G++E+ I+EI KIIH+ G  +Y DGAN+NA   +T+
Sbjct:   23 SLSEQVDESILPENLKRKDLELPEV------SEYDVVRHYTRLSQMNYTVDVGIYPLGSCTMKYNPKFADRVSAIDGFRNIHPFQPENTVQGALHVMYDLQEYLKKISDMDAVSLQPMAGADGEFTGILIVKKYFEDKGE-DRTEIIIPDSAHGTNPASATMGGFDVVEVPSDDKGMVDLEALRAAVS---KKTAAFMITNPNTLGIFEQNIEEIAKIIHNAGALLYYDGANLNAIFGITS 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_FRAP2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.898e-39
Identity = 92/243 (37.86%), Postives = 130/243 (53.50%), Query Frame = 2
Query:   23 GKSVPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            GK+ P    S   +V     + L  + P L +        E +++R+   L  K   +  +  PLGSCTMK N        +   F   HP+A A   QG  E   +L   +  +TG    SL P AGA GE+AG+ +I+AYH  RGD  R+  I+P +AHGTNPATA +CG+K++ + T   G+I+IE L K         + +M+T PST GV+E  I  I K +H+ GG +Y DGAN+NA
Sbjct:    9 GKNSPSVMPSKKGDVSNIPANMLRSKKPILPE------QAELDVVRHYTQLSRKNFCIDTNFYPLGSCTMKYNPRAAHKYASLAGFLERHPYASAQSVQGTLECLYDLQNLIKELTGMTGVSLAPMAGAQGEFAGVAMIKAYHHKRGDFERDEIIVPDAAHGTNPATAKVCGLKVIEIPTKKDGDIDIEALDKVL---GPKTAGIMLTNPSTVGVFERNIAVIAKKVHEAGGLLYYDGANLNA 242          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_BACLD1.439e-4041.67Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_SYNWW1.880e-4037.04Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_LEGPL1.880e-4040.69Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACSK1.880e-4039.22Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PROA23.207e-4040.42Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEAB4.188e-4037.66Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_NITEU4.188e-4039.92Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THIDA1.219e-3943.63Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEVO3.545e-3938.59Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_FRAP27.898e-3937.86Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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