EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12632 contig Csv1_Contig12632:598..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_CAUCR (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Caulobacter crescentus GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.032e-38
Identity = 89/231 (38.53%), Postives = 126/231 (54.55%), Query Frame = 2
Query:   71 TAIPS----GLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            TA PS    GL R++P     +     +E E +R+   L  K  ++  ++ PLGSCTMK N          P F++IHP  P    QG  E+ + L  WL T+TG  + +L P AGA GE  GL+ IRA H+A G+ HR   + P SAHGTNPATAA  G  +V +     G +++ +L        D+++ +MVT P+T G++E  + EI ++ H  G   Y DGAN NA
Sbjct:   53 TAAPSSDLNGLLRDAPIGLPGL-----SEPETVRHYVRLSQKNHAIDLALYPLGSCTMKHNPRLNEKMARLPGFSDIHPLQPQSTVQGALELMDRLAHWLKTLTGMPAVALTPKAGAHGELCGLLAIRAAHEAAGNGHRKTVLAPTSAHGTNPATAAFVGYTVVEIAQTEDGRVDLADLESKL---GDHVAAIMVTNPNTCGLFERDVVEIARLTHAAGAYFYCDGANFNA 275          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEP1 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.347e-38
Identity = 85/228 (37.28%), Postives = 133/228 (58.33%), Query Frame = 2
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E ++P+   R +P     V     +E +++R+   L  K  S+   + PLGSCTMK N            F  IHP+ PA+  QG   +   L E LC ITG D  +LQP AGA GE  G++++R Y K+RGD  R   ++P SAHGTNPA+A+M G ++V +     G +++E+L+K  +   + ++ +M+T P+T G++E+ I +I ++ H+ G  +Y DGAN+NA
Sbjct:   23 EYSLPNRFLRRTPPELPEV-----SEPDVVRHYTDLARKNYSVDRGIYPLGSCTMKYNPKLNEKVANLEGFREIHPYQPAETVQGSLRLMYELKEMLCEITGMDDMTLQPAAGAHGELTGMLIVREYFKSRGDTGRKKVLVPDSAHGTNPASASMVGFEVVEI-KSKNGMVDVEDLKKLLD---EEVAAVMLTNPNTLGLFEKDILKIAEMTHECGALLYYDGANLNA 241          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_FRATN (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Francisella tularensis subsp. novicida (strain U112) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.347e-38
Identity = 92/243 (37.86%), Postives = 129/243 (53.09%), Query Frame = 2
Query:   23 GKSVPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            GK+ P    S   +V       L  + P L +        E +++R+   L  K   +  +  PLGSCTMK N        +   F   HP+A A   QG  E   +L   +  +TG    SL P AGA GE+AG+ +I+AYH  RGD  R+  I+P +AHGTNPATA +CG+K++ + T   G+I+IE L K         + +M+T PST GV+E  I  I K +H+ GG +Y DGAN+NA
Sbjct:    9 GKNSPSVMPSKKGDVSNIPTDMLRTKKPILPE------QAELDVVRHYTQLSRKNFCIDTNFYPLGSCTMKYNPRAAHKYASLAGFLERHPYASAQSIQGTLECLYDLQNLIKELTGMTGVSLAPMAGAQGEFAGVAMIKAYHHKRGDFERDEIIVPDAAHGTNPATAKVCGLKVIEIPTKKDGDIDIEALDKVL---GPKTAGIMLTNPSTVGVFERNIAVIAKKVHEAGGLLYYDGANLNA 242          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_CHLT3 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.347e-38
Identity = 88/231 (38.10%), Postives = 136/231 (58.87%), Query Frame = 2
Query:   59 EEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +EV   IP+   R++      V      E+E++R+   L +    +   M PLGSCTMK N     +    P F+ +HP  P +  QG  ++   L EWL  I G  + SLQP AGA GE  G+++IR YH+ +G   + + ++P SAHGTNPA++A+ G   V V T+A+G  ++++LR   +   ++++ LM+T P+T G++E  I EI +++H NG  +YMDGANMNA
Sbjct:   27 QEVSELIPAQFLRKAKADLPEV-----QENEVVRHFVKLSTLNHHVDKGMYPLGSCTMKYNPKVNEVTSALPGFSALHPLQPQESVQGALKLMYELQEWLKEICGMKAVSLQPVAGAHGELTGILLIRKYHEKQGKPRKKI-LVPDSAHGTNPASSAIAGYMTVGVKTNARGLTDMDDLRAKLD---EDVAALMLTNPNTLGIFESQILEISELLHANGSLLYMDGANMNA 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEM4 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.298e-38
Identity = 81/204 (39.71%), Postives = 123/204 (60.29%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L +K  ++     PLGSCTMK N        +   F  IHP  P +  QG  ++   L E LC I+G D  +L P+AGA GE  G+++ RAYH +RGD  R   I+P SAHGTNPA+A M G ++V + +   G I++EEL K  +   D ++ L++T P+T G++E+ I +I + +H +G  +Y DGAN+NA
Sbjct:   44 SELDIVRHYTNLAAKNYAVDVGFYPLGSCTMKYNPKINEKLASLEGFTMIHPCQPREVTQGALQLMYELKEMLCEISGMDDMTLIPSAGAHGELTGMLIARAYHLSRGDTKRKKAIVPDSAHGTNPASAMMAGFEVVELKSGKDGRIDLEELEKHLD---DEVAVLLLTNPNTLGLFEKDIIKIAETVHKHGALLYYDGANLNA 244          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_NITOC (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.920e-38
Identity = 85/225 (37.78%), Postives = 125/225 (55.56%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +P    R+ P     V     +E +++R+   L  K  S+     PLGSCTMK N        + P F   HP  P   +QG+      L + L  +TG  + SL P AGA GE+ G+ +IRAYH+ARGD  R   ++P +AHGTNPATA MCG ++  + T+ +G++++E L KA        + +M+T PST G+++  I  I + +H  GG +Y DGAN+NA
Sbjct:   27 LPERFLRQQPPALPEV-----SEMDVVRHYTGLSQKNFSIDTHFYPLGSCTMKYNPRACHTLASLPGFLERHPATPEAMSQGFLACLYELQDILAKMTGMQTMSLAPMAGAQGEFTGVAMIRAYHEARGDKERCEMLVPDAAHGTNPATATMCGFRVREIPTNPEGDVDLEALHKAL---GPQTAGIMLTNPSTLGIFDRNIQVIAQSVHKAGGLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_FRATW (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.120e-38
Identity = 91/243 (37.45%), Postives = 128/243 (52.67%), Query Frame = 2
Query:   23 GKSVPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            GK+ P    S   +V       L  + P L +        E +++R+   L  K   +  +  PLGSCTMK N        +   F   HP+A A   QG  E   +L   +  +TG    SL P AGA GE+AG+ +I+AYH  R D  R+  I+P +AHGTNPATA +CG+K++ + T   G+I+IE L K         + +M+T PST GV+E  I  I K +H+ GG +Y DGAN+NA
Sbjct:    9 GKNSPSVMPSKKGDVSNIPTDMLRTKKPILPE------QAELDVVRHYTQLSRKNFCIDTNFYPLGSCTMKYNPRAAHKYASLAGFLERHPYASAQSVQGTLECLYDLQNLIKELTGMTGVSLAPMAGAQGEFAGVAMIKAYHHKRSDFERDEIIVPDAAHGTNPATAKVCGLKVIEIPTKKDGDIDIEALDKVL---GPKTAGIMLTNPSTVGVFERNIAVIAKKVHEAGGLLYYDGANLNA 242          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_FRATM (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.120e-38
Identity = 91/243 (37.45%), Postives = 128/243 (52.67%), Query Frame = 2
Query:   23 GKSVPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            GK+ P    S   +V       L  + P L +        E +++R+   L  K   +  +  PLGSCTMK N        +   F   HP+A A   QG  E   +L   +  +TG    SL P AGA GE+AG+ +I+AYH  R D  R+  I+P +AHGTNPATA +CG+K++ + T   G+I+IE L K         + +M+T PST GV+E  I  I K +H+ GG +Y DGAN+NA
Sbjct:    9 GKNSPSVMPSKKGDVSNIPTDMLRTKKPILPE------QAELDVVRHYTQLSRKNFCIDTNFYPLGSCTMKYNPRAAHKYASLAGFLERHPYASAQSVQGTLECLYDLQNLIKELTGMTGVSLAPMAGAQGEFAGVAMIKAYHHKRSDFERDEIIVPDAAHGTNPATAKVCGLKVIEIPTKKDGDIDIEALDKVL---GPKTAGIMLTNPSTVGVFERNIAVIAKKVHEAGGLLYYDGANLNA 242          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_AERPE (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Aeropyrum pernix GN=gcvPB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.120e-38
Identity = 89/225 (39.56%), Postives = 129/225 (57.33%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            +P  L R SP     V     +E E++R+   L      + +  +PLGSCTMK N          P    +HP    +  QG  E    + EWL  ITG D+ ++ P AG+ GE AG+++I+ +H+ RGD   R V I+P SAHGTNPA+AAM G ++V V T   GN+++E L+ A      + + LM+T PST G++EE I EI +++H+ GG +Y DGAN+N
Sbjct:   41 LPQSLARGSPPSLPEV-----SEVEVVRHYTRLSQMAYGVDNGPVPLGSCTMKYNPRVAARLAFDPRLETLHPLQDDETVQGVLEAIYMVQEWLRHITGMDACTVHPAAGSQGELAGVLMIKRFHEMRGDLDKRRVIIVPDSAHGTNPASAAMGGFQVVEVPTGDDGNVDMEALKAAVGG---DTAGLMITNPSTLGLFEENILEISRLVHEAGGLLYYDGANLN 257          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THESQ (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermotoga sp. (strain RQ2) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.686e-38
Identity = 85/228 (37.28%), Postives = 130/228 (57.02%), Query Frame = 2
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E ++P    R +P     V     +E +++R+   L  K  S+   + PLGSCTMK N            F  IHP+ P +  QG   +   L E LC ITG D  +LQP AGA GE  G++++R Y K RGD  R   ++P SAHGTNPA+A+M G ++V +     G +++E+LRK  +   + ++ +M+T P+T G++E+ I +I ++ H+ G  +Y DGAN+NA
Sbjct:   23 EYSLPDRFLRSTPPKLPEV-----SEPDVVRHYTDLARKNYSVDLGIYPLGSCTMKYNPKLNEKAANLEGFREIHPYQPVETVQGSLRLMYELKEMLCEITGMDDMTLQPAAGAHGELTGMLIVREYFKNRGDTGRKKVLVPDSAHGTNPASASMVGFEVVEI-KSKNGMVDVEDLRKLLD---EEVAAVMLTNPNTLGLFEKDILKIAEMTHECGALLYYDGANLNA 241          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_CAUCR1.032e-3838.53Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEP11.347e-3837.28Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_FRATN1.347e-3837.86Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_CHLT31.347e-3838.10Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEM42.298e-3839.71Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_NITOC3.920e-3837.78Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_FRATW5.120e-3837.45Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_FRATM5.120e-3837.45Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_AERPE5.120e-3839.56Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THESQ6.686e-3837.28Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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