EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12632 contig Csv1_Contig12632:598..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_CHLL2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.660e-37
Identity = 84/229 (36.68%), Postives = 130/229 (56.77%), Query Frame = 2
Query:   65 VETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +ET +P+   R     T+P       E E++R+   L +    +  +M PLGSCTMK N            F+ +HP  P    QG  +M   L   L  I G  + +LQP AGA GE  G+++I+ YH+ARG     + ++  SAHGTNPA+AA+ G +I+SV ++A G  ++ +L+   +     ++ LM+T P+T G++E+ I  I +++H+NG  +YMDGANMNA
Sbjct:   29 IETVLPAKFLR-----TEPADLPEVPESEVVRHFIRLSNMNYHVDKNMYPLGSCTMKYNPKVNDAACDLAGFSELHPLQPEKTVQGALQMMYELSGMLAEIAGMSAVTLQPAAGAHGELTGILLIKKYHEARGSKRSKLLVVD-SAHGTNPASAAIAGYEIISVSSNADGRTDLGDLKAKLDG---EVAALMLTNPNTIGLFEKDILTIAQMVHENGSLLYMDGANMNA 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_CHLTE (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Chlorobium tepidum GN=gcvPB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.174e-36
Identity = 88/246 (35.77%), Postives = 134/246 (54.47%), Query Frame = 2
Query:   17 AGGKSVPFTAASLAEE-VETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +G K    +   + E   +  +PS   R+ P     +      E E++R+   L +    +  +M PLGSCTMK N          P FA++HP  P   +QG  ++   L E L  I G  + +LQP AGA GE  G+++I+ YH+  G+    + ++  SAHGTNPA+AA+ G + VSV  D  G  ++ +LR   +     ++ LM+T P+T G++E+ I EI K++H NG  +YMDGANMNA
Sbjct:   12 SGRKGYSLSPLDIPERPADELLPSKFLRKEPAELPEM-----AESEVVRHFIRLSNLNYHVDKNMYPLGSCTMKYNPKINDYTCDLPGFASMHPLQPESTSQGALQLMYELAEMLKEIAGMKAVTLQPAAGAHGELTGILLIKKYHEKLGNKRHKLLVVD-SAHGTNPASAALGGYECVSVKCDESGCTDMGDLRAKLDG---EVAALMLTNPNTVGIFEKQIPEIEKLVHGNGSLLYMDGANMNA 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THENN (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.068e-35
Identity = 76/204 (37.25%), Postives = 120/204 (58.82%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L  K  ++   + PLGSCTMK N          P F N+HP  P +  QG  ++   L   LC ITG D  +LQP AGA GE  G+++++ +   R D  R   ++P SAHGTNPA+A+M G ++V +     G +++E+LRK  +   D ++ +M+T P+T G++E  I +I ++ H+ G  +Y DGAN+NA
Sbjct:   42 SEPDVVRHYTELARKNYAVDVGIYPLGSCTMKYNPKLNERTANLPGFRNVHPLQPEETLQGCLQLMYELKAMLCEITGMDDMTLQPAAGAHGELTGMLIVKKFFDDRKDTKRKKVLVPDSAHGTNPASASMVGFEVVEI-KSKNGMVDVEDLRKHLD---DEVAAVMLTNPNTLGLFERDILKIAELTHNCGALLYYDGANLNA 241          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEAC (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermoplasma acidophilum GN=gcvPB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.106e-35
Identity = 88/246 (35.77%), Postives = 138/246 (56.10%), Query Frame = 2
Query:   41 TAASLAEEV-ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHH--RNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAXGRLTA 769
            T+  L+E+V E  +P  + R    L         +E +++R+   L     ++   + PLGSCTMK N        ++  F NIHPF P    QG  ++   L E+L  I+  D+ +LQP AGA GE+ G+++I+ Y +   D H  R   I+P SAHGTNPA+A M G  +V + ++++G +++  L+ A        + LM+T P+T G++E+ I EI KI+HD G  +Y DGAN+NA   +T+
Sbjct:   20 TSFKLSEDVDENLLPQDMRRTDLKLPQV------SEVDVVRHYTRLSQMNYTVDVGIYPLGSCTMKYNPKYADRIASFAEFRNIHPFQPESTVQGTLQIMYELQEFLKKISDMDAVTLQPMAGADGEFTGILIIKKYFE---DLHEDRTEIIVPDSAHGTNPASATMGGFDVVEIPSNSEGMVDLNALKAAIS---KKTAALMITNPNTLGIFEQNITEIAKILHDAGALLYYDGANLNAIFGITS 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_SULSO (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Sulfolobus solfataricus GN=gcvPB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.106e-35
Identity = 87/227 (38.33%), Postives = 127/227 (55.95%), Query Frame = 2
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            E  IP  L RE+    +P      +E E++R+   L      +   ++PLGSCTMK N   E        F   HP    D  QG  EM   L  W   ITG D  SLQ  AG+AGE+AG+++I+ YH+    ++++  ++  +AHGTNPA+AAM G K++ V ++A+G ++++ LR   E   D  +  M+T P+T G++EE I EI KIIH     +Y DGAN+N
Sbjct:   39 EMKIPKNLLREN----EPDLPSL-SELEVVRHFVRLSQMNFGVDIGIMPLGSCTMKYNPKIEEKATAITEFH--HPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHEEHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILR---EIVNDKTAGFMLTNPNTLGLFEENILEISKIIHSTNAVLYYDGANLN 255          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_PROVI (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.056e-35
Identity = 87/225 (38.67%), Postives = 126/225 (56.00%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            IP    R+SP     V      E E++R+   L +    +   M PLGSCTMK N        +   FA +HP  P    QG  ++ + L   L  ITG  S +LQP AGA GE AG+++I+ YH+A+    R   ++  SAHGTNPA+AA+ G  IVSV ++  G  ++ +L+   E    +++ LM+T P+T G++E+ I  I  ++H NG  +YMDGANMNA
Sbjct:   33 IPGKFLRQSPAELPEV-----PESEVVRHFLRLSTLNYHVDKDMYPLGSCTMKYNPKINDETCSLEGFAALHPMQPESTVQGALQLMHELSGMLAEITGMASVTLQPAAGAHGELAGILLIKKYHEAQ-HSKRTTLLVVDSAHGTNPASAALAGYTIVSVKSNGIGRTDLNDLK---EKLNGDVAALMLTNPNTIGLFEKEIVAIADMVHKNGSLLYMDGANMNA 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAMF (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.180e-34
Identity = 87/225 (38.67%), Postives = 124/225 (55.11%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            IP  + R+ P     V     +E E++R+   L      + +  +PLGSCTMK N               +HP       QG  E+   L +WL  ITG D  SL P AGA GE++G+++IR YH+ +     ++  IIP SAHGTNPA+A+M G K+V V +   GNI++E L+       ++ + LM+T PST G++EE + EI KIIH   G +Y DGAN+N
Sbjct:   41 IPEKILRKKPPNLPEV-----SEVEVIRHYTRLTEMSYGVDNGPVPLGSCTMKYNPRIAWEISNDYRINMLHPLQDERTIQGLLEILYELQKWLANITGMDYCSLHPAAGAHGEFSGILIIRKYHELKKQLDRKSEIIIPDSAHGTNPASASMGGFKVVEVPSGEDGNIDMEALKSVV---GESTAGLMITNPSTLGLFEENVVEISKIIHGVDGLLYYDGANLN 257          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_HALSA (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Halobacterium salinarium GN=gcvPB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.013e-34
Identity = 84/232 (36.21%), Postives = 131/232 (56.47%), Query Frame = 2
Query:   65 VETAIPSGLTRES---PYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            V+ ++P  LTR++   P L +P         EL R+   L  +   +     PLGSCTMK N          P+ A +HP       QG   + ++L ++L  I G D+ +LQP AGAAGE+ G+++  AYH+A    HRN  I+P +AHGTN A+AA+ G  ++ + +   G ++++ L  A     +N + LM+T P+T G++E  I+ I +++HD GG +Y DGAN+NA
Sbjct:   31 VDPSLPDDLTRDTVELPSLEEP---------ELARHYVRLSQQNYGVDSGPYPLGSCTMKYNPRFTEDAAALPAAA-VHPDRSETALQGTLAVMHDLQDYLGRIGGMDAVTLQPPAGAAGEFTGILIAEAYHEATDGGHRNEVIVPDAAHGTNFASAALGGYDVIELPSGDDGRVDLDALEAAL---GENTAALMLTNPNTLGLFERDIEPIAEMVHDAGGLLYYDGANLNA 249          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THET8 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvPB PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.629e-34
Identity = 85/231 (36.80%), Postives = 135/231 (58.44%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            + E  IP    RE P     V      E  L+R+   L  +++ +  +  PLGSCTMK N   ++       FA++HP+     AQG   +   LGE+L  +TG D+ +L+P AGA GE  G+++IRAYH+ RG+   R V ++P SAHG+NPATA+M G ++  + +  +G +++E L++       +++ LM+T P+T G++E  I EI ++  + G Q+Y DGAN+NA
Sbjct:   25 KAEDLIPKEHLREVPPRLPEV-----DELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNP--KLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKREL---GPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNA 245          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THET2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.629e-34
Identity = 85/231 (36.80%), Postives = 135/231 (58.44%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            + E  IP    RE P     V      E  L+R+   L  +++ +  +  PLGSCTMK N   ++       FA++HP+     AQG   +   LGE+L  +TG D+ +L+P AGA GE  G+++IRAYH+ RG+   R V ++P SAHG+NPATA+M G ++  + +  +G +++E L++       +++ LM+T P+T G++E  I EI ++  + G Q+Y DGAN+NA
Sbjct:   25 KAEDLIPKEHLREVPPRLPEV-----DELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNP--KLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKREL---GPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNA 245          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_CHLL25.660e-3736.68Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_CHLTE8.174e-3635.77Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THENN1.068e-3537.25Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEAC3.106e-3535.77Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_SULSO3.106e-3538.33Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PROVI4.056e-3538.67Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAMF1.180e-3438.67Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_HALSA2.013e-3436.21Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THET82.629e-3436.80Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THET22.629e-3436.80Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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