EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12632 contig Csv1_Contig12632:598..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAHJ (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.439e-41
Identity = 86/203 (42.36%), Postives = 124/203 (61.08%), Query Frame = 2
Query:  143 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +L+R+   L +K   +     PLGSCTMK N          P FA  HP     Q QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH   G+ HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++IE+L++      +N + +M+T P+T G++E+ I EI +I+H+ GG +Y DGAN+NA
Sbjct:   54 ELDLVRHYTELSNKNFGVDSGFYPLGSCTMKYNPKINEKVARIPGFAESHPLQEEGQVQGSLEIVYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHLDNGEGHRDEVIVPDSAHGTNPASASFAGFKAVTVKSNERGEVDIEDLKRVV---NENTAAIMLTNPNTLGIFEKNIMEIREIVHEAGGLLYYDGANLNA 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_NITMU (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.439e-41
Identity = 95/227 (41.85%), Postives = 127/227 (55.95%), Query Frame = 2
Query:   71 TAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            T IP  L R++  L   V     +E + +R+   L  K  S+     PLGSCTMK N          P F   HP +P    QG+      L E L  +TG    SL P AGA GE  G+ +IRAYH++RGD  R   I+P +AHGTNPATA MCG K+V + TD +GN+++  L+ A        + LM+T PST GV+EE + E+ +I+H  GG +Y DGAN+NA
Sbjct:   24 TDIPEKLLRKTLPLLPEV-----SEMDAVRHYTRLSQKNFSIDTHFYPLGSCTMKYNPRACNSLAMLPQFLARHPRSPESTGQGFLACMYELQEILKDVTGMAGVSLTPMAGAQGELIGIAMIRAYHESRGDTARTEIIVPDAAHGTNPATAVMCGYKVVEIATDKEGNVDMAALKAAV---GPKTAGLMLTNPSTLGVFEENVAEMSRIVHQAGGLLYYDGANLNA 242          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_EXIS2 (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.439e-41
Identity = 91/228 (39.91%), Postives = 133/228 (58.33%), Query Frame = 2
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E  +P+ L R+       V     +E +L+R+   L ++   +     PLGSCTMK N          P FA+IHP  P +  QG   +  +L E L  ITG D  +LQP AGA GE+ GLM+I+AYH ARGD  R   ++P SAHGTNPA+A++ G   V+V +D +G +++ +L+       ++ + LM+T P+T G++E  I EI K +H+ GG++Y DGAN NA
Sbjct:   34 EELLPAHLLRQEDVELPEV-----SELDLVRHYTALSNRNHGVDSGFYPLGSCTMKYNPKINEDMARLPGFAHIHPLQPVESVQGALGLMYDLQEKLAVITGMDEVTLQPAAGAHGEWTGLMLIKAYHHARGDFKRTKVLVPDSAHGTNPASASVAGFDTVTVLSDERGLVDLADLKSKV---GEDTAALMLTNPNTLGLFESDIVEIAKAVHEAGGKLYYDGANSNA 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_DESRM (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Desulfotomaculum reducens (strain MI-1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.439e-41
Identity = 94/245 (38.37%), Postives = 139/245 (56.73%), Query Frame = 2
Query:   20 GGKSVPFTAASLAE-EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            G + V F A  + E      +P  L RE       V     +E + +R+   L      +     PLGSCTMK N            FANIHP+ P + +QG  ++     + L  ITG D+F+LQP AGA GE  G+++I+AY +++G+  RN  I+P SAHGTNPATAA+CG K+V V +D +G +++  L++       +++ LM+T PST G++E+ I EI  ++H  GG +Y DGAN+NA
Sbjct:   13 GRQGVLFPANDVPEIPPHELLPRDLIREQEVPLPEV-----SEGDAVRHFVRLSRMNFGVDVGFYPLGSCTMKYNPKVAEDAAGLSGFANIHPYQPDEISQGALQLMYETQQDLAEITGMDAFTLQPAAGAQGELTGMLIIKAYLESKGETGRNKVIVPDSAHGTNPATAALCGFKVVEVKSDQRGGVDLAALKQLL---GPDVAALMLTNPSTLGLFEDNITEIAALVHQAGGLLYYDGANLNA 249          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THELT (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.102e-40
Identity = 86/231 (37.23%), Postives = 131/231 (56.71%), Query Frame = 2
Query:   59 EEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            + ++   P  L R  P     +     +E +++R+   L  K  S+     PLGSCTMK N            F +IHP+ P +  QG  ++   L E+LC ITG D  +LQP AGA GE  G++++RAYH +R D  R+V ++P SAHGTNPA+AAM G  +V + +   G +++E+L        D ++ LM+T P+T G++E+ I +I + +H  G  +Y DGAN+NA
Sbjct:   22 QRIDPVFPEHLKRTRPLRLPEL-----SEPDVVRHYTALAEKNYSVDKGFYPLGSCTMKYNPKLNEYVAGLEGFTDIHPYQPWESVQGALQVMYELKEFLCEITGMDEMTLQPAAGAHGELTGMLIVRAYHLSRNDKKRHVALVPDSAHGTNPASAAMAGFDVVEIKSTEDGLVDLEQLENHL---NDEIAVLMLTNPNTLGLFEKDIVKIAEKVHQAGALLYYDGANLNA 244          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAES (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.102e-40
Identity = 85/204 (41.67%), Postives = 124/204 (60.78%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +L+R+   L +K   +     PLGSCTMK N            F+  HP    +  QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G  HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++IE+L++      DN + +M+T P+T G++E+ I EI KI+H+ GG +Y DGAN+NA
Sbjct:   52 SELDLVRHYTELSNKNFGVDTGFYPLGSCTMKYNPKINEKVARISGFSESHPLQEEEHVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHEKNGQSHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNQRGEVDIEDLKRVV---NDNTAAIMLTNPNTLGIFEQNIIEIGKIVHEAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_STAEQ (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.439e-40
Identity = 85/204 (41.67%), Postives = 124/204 (60.78%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +L+R+   L +K   +     PLGSCTMK N            F+  HP    +  QG  E+  +L E L  ITG D  +LQP AGA GE+  LM+ +AYH+  G  HR+  I+P SAHGTNPA+A+  G K V+V ++ +G ++IE+L++      DN + +M+T P+T G++E+ I EI KI+H+ GG +Y DGAN+NA
Sbjct:   52 SELDLVRHYTELSNKNFGVDTGFYPLGSCTMKYNPKINEKVARISGFSESHPLQEEEHVQGSLEIIYSLQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHEKNGQSHRDEVIVPDSAHGTNPASASFAGFKSVTVKSNQRGEVDIEDLKRVV---NDNTAAIMLTNPNTLGIFEQDIIEIGKIVHEAGGLLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_LEGPH (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.439e-40
Identity = 88/226 (38.94%), Postives = 132/226 (58.41%), Query Frame = 2
Query:   74 AIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +IP    R+SP           +E +++R+   L  K  S+  +  PLGSCTMK N        + P F N HP A  +++QG+ E    L  ++  ITG    SL P AG+ GE+AG+ +I+AYH++RGD  R+  +IP +AHGTNPA+A MCG K+V + T   G+I+++EL++         + +M+T PST G++   I EI  ++H  GG +Y DGAN+NA
Sbjct:   26 SIPEEFQRKSPPRLPAC-----SELQVVRHFTCLSQKNFSIDTNFYPLGSCTMKYNPRGVHKAASLPGFINRHPLAMDNESQGFLETLYKLQNYISEITGMPGVSLTPMAGSQGEFAGVAMIKAYHQSRGDTARDEILIPDAAHGTNPASAVMCGFKVVEIATAPDGDIDLDELKRKV---GPRTAGIMLTNPSTLGLFMRQIKEIASLVHQAGGLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_LEGPC (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Legionella pneumophila (strain Corby) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.439e-40
Identity = 88/226 (38.94%), Postives = 132/226 (58.41%), Query Frame = 2
Query:   74 AIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +IP    R+SP           +E +++R+   L  K  S+  +  PLGSCTMK N        + P F N HP A  +++QG+ E    L  ++  ITG    SL P AG+ GE+AG+ +I+AYH++RGD  R+  +IP +AHGTNPA+A MCG K+V + T   G+I+++EL++         + +M+T PST G++   I EI  ++H  GG +Y DGAN+NA
Sbjct:   26 SIPEEFQRKSPPRLPAC-----SELQVVRHFTCLSQKNFSIDTNFYPLGSCTMKYNPRGVHKAASLPGFINRHPLAMDNESQGFLETLYKLQNYISEITGMPGVSLTPMAGSQGEFAGVAMIKAYHQSRGDTARDEILIPDAAHGTNPASAVMCGFKVVEIATAPDGDIDLDELKRKV---GPRTAGIMLTNPSTLGLFMRQIKEIASLVHQAGGLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_LEGPA (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Legionella pneumophila (strain Paris) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.439e-40
Identity = 88/226 (38.94%), Postives = 132/226 (58.41%), Query Frame = 2
Query:   74 AIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +IP    R+SP           +E +++R+   L  K  S+  +  PLGSCTMK N        + P F N HP A  +++QG+ E    L  ++  ITG    SL P AG+ GE+AG+ +I+AYH++RGD  R+  +IP +AHGTNPA+A MCG K+V + T   G+I+++EL++         + +M+T PST G++   I EI  ++H  GG +Y DGAN+NA
Sbjct:   26 SIPEEFQRKSPPRLPAC-----SELQVVRHFTCLSQKNFSIDTNFYPLGSCTMKYNPRGVHKAASLPGFINRHPLAMDNESQGFLETLYKLQNYISEITGMPGVSLTPMAGSQGEFAGVAMIKAYHQSRGDTARDEILIPDAAHGTNPASAVMCGFKVVEIATAPDGDIDLDELKRKV---GPRTAGIMLTNPSTLGLFMRQIKEIANLVHQAGGLLYYDGANLNA 243          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_STAHJ8.439e-4142.36Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_NITMU8.439e-4141.85Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_EXIS28.439e-4139.91Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_DESRM8.439e-4138.37Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THELT1.102e-4037.23Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAES1.102e-4041.67Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAEQ1.439e-4041.67Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_LEGPH1.439e-4038.94Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_LEGPC1.439e-4038.94Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_LEGPA1.439e-4038.94Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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