EY659349

Overview
NameEY659349
Unique NameEY659349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:583..1472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.666e-39
Identity = 99/264 (37.50%), Postives = 145/264 (54.92%), Query Frame = 3
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMF-------------------TTTA-----EREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLI----GME--------AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G G +   P+++GY L  A++   L G  LTD L+K L  +G      Y F                   TT +     +R IV D+K+ +  V    +   +    S+    +YELPDGQ + IGA+RF+ P+V+F PS++    GME          G+      SI KCDVDIR++LY +I+L+GG++    + +R+ K++   +P S ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  180 GGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVP---DTPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.847e-39
Identity = 89/221 (40.27%), Postives = 128/221 (57.92%), Query Frame = 3
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALM-KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQP-SLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G GVS+TVP+++GY LP  I R+DLAG  LT  L  KIL  R        + + + ++K++  YVALD+++E    +      +  +LPDGQ+IT+G E F+CPE+LF P    G  + G+     +S+     ++R D+  N++L GGS++F G   R   E+         + VVA   R  SVWIGGSILASL  FQ  W+ + +Y+E GP IV RKC
Sbjct:  194 GHGVSYTVPVFQGYNLPSGIQRMDLAGHYLTKFLAEKIL--RSSFAVKKEDMDTMENIKQQYCYVALDFQKE--QGRPDEKFRRCLKLPDGQMITVGKELFQCPELLFHPPDTSGPSSLGLPSMVEHSLSTVPQELRADMEQNVLLCGGSSLFTGFEGRFKTELLRRLGPEAHVVVVAQANRNLSVWIGGSILASLCAFQTRWVLREQYEEHGPDIVLRKC 410          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.252e-36
Identity = 95/263 (36.12%), Postives = 137/263 (52.09%), Query Frame = 3
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFT-----------------TTAE-------REIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLI-----------GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G G +    +++GY L  ++    + G  LTD +MK L  +G      Y F                   T E       R I  D+KE +  V      E+  A   ++   +YELPDGQ I +GA+RF+ P++LF PSL             M   G+     +S+ +CDVDIRK+L  +I+LSGGS+    + +R+ KE+   +  + ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  183 GGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKGVVIRPRYSFKKKEVGPGEYKVVDLDLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTT---SYELPDGQTIEVGADRFKIPDILFNPSLSQTIPGVDGFADSMSVRGLPRMVIDSVNRCDVDIRKELLSSILLSGGSSSILQLKERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.252e-36
Identity = 95/263 (36.12%), Postives = 137/263 (52.09%), Query Frame = 3
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFT-----------------TTAE-------REIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLI-----------GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G G +    +++GY L  ++    + G  LTD +MK L  +G      Y F                   T E       R I  D+KE +  V      E+  A   ++   +YELPDGQ I +GA+RF+ P++LF PSL             M   G+     +S+ +CDVDIRK+L  +I+LSGGS+    + +R+ KE+   +  + ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  183 GGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKGVVIRPRYSFKKKEVGPGEYKVVDLDLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTT---SYELPDGQTIEVGADRFKIPDILFNPSLSQTIPGVDGFADSMSVRGLPRMVIDSVNRCDVDIRKELLSSILLSGGSSSILQLKERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 97/259 (37.45%), Postives = 138/259 (53.28%), Query Frame = 3
Query:   18 GVSHT--VPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERFRCPEVLFQPS----LIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G +HT  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER R PE LF PS    L G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  170 GATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 97/259 (37.45%), Postives = 138/259 (53.28%), Query Frame = 3
Query:   18 GVSHT--VPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERFRCPEVLFQPS----LIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G +HT  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER R PE LF PS    L G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  170 GATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 97/259 (37.45%), Postives = 138/259 (53.28%), Query Frame = 3
Query:   18 GVSHT--VPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERFRCPEVLFQPS----LIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G +HT  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER R PE LF PS    L G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  170 GATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 97/259 (37.45%), Postives = 138/259 (53.28%), Query Frame = 3
Query:   18 GVSHT--VPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERFRCPEVLFQPS----LIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G +HT  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER R PE LF PS    L G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  170 GATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 94/259 (36.29%), Postives = 136/259 (52.51%), Query Frame = 3
Query:   18 GVSHT--VPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVAL------------DYEQELETAKSSSSVEK--------NYELPDGQIITIGAERFRCPEVLFQPS----LIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G +HT  +P+++GY L   I++  LAG  +T    ++  E        YM    A +E VR+        KEKL  V              D++  +     S+  E+        +YE P+G     GAER + PE LF PS    L G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  173 GATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMI---ASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 92/256 (35.94%), Postives = 134/256 (52.34%), Query Frame = 3
Query:   18 GVSHT--VPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT---AEREIVRD-------MKEKLAYVAL------------DYEQELETAKSSSSVEK--------NYELPDGQIITIGAERFRCPEVLFQPS----LIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 668
            G +HT  +P+++GY L   I++  LAG  +T    ++  E           A +E VR+        KEKL  V              D++  +     S+  E+        +YE P+G     GAER + PE LF PS    L G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E++   P SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  173 GATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELVPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
The following BLAST results are available for this feature:
BLAST of EY659349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 486
Match NameE-valueIdentityDescription
ARP4_ARATH1.666e-3937.50Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ACTL9_RAT4.847e-3940.27Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]
ARP4_ORYSJ2.252e-3636.12Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI2.252e-3636.12Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ACL6B_RAT6.551e-3637.45Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE6.551e-3637.45Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN6.551e-3637.45Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6B_BOVIN6.551e-3637.45Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6A_MOUSE2.489e-3536.29Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACL6A_MACFA2.489e-3535.94Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659349 ID=EY659349; Name=EY659349; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGGTGATGGTGTCTCTCATACTGTACCAATCTATGAGGGA
TATGCCCTTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCT
CACTGATGCATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCA
CCACAGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTAT
GTTGCCCTAGACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATC
TGTTGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAG
CTGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGA
ATGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTG
TGATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGG
GTTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACA
GCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAG
AAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCT
TCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCC
ATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGT
TCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAG
TTGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAANGAGGCATAT
CTCGATATTTGATGTATTATACAGCTTCTTACAGCGTTTGAGGGGGGCTT
TATTCTGTACTCACCATCTTCCNTTGCTTGCATTCATCT
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