EY659349

Overview
NameEY659349
Unique NameEY659349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:583..1472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTC_TAKRU (Actin, alpha cardiac OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 8.379e-108
Identity = 188/220 (85.45%), Postives = 204/220 (92.73%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGY F TTAEREIVRD+KEKL YVALD+E E+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  158 GDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACT3_ECHGR (Actin-3 (Fragment) OS=Echinococcus granulosus GN=ACTIII PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 8.379e-108
Identity = 189/220 (85.91%), Postives = 204/220 (92.73%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT EREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE L+QPS +GMEA GIHETT+NSIMKCDVDIRKDLY N VLSGGSTM+PGIADRM KEITALAPS+MKIK+VAPP+ KYSVWIGGSILASLSTF +MWISK EYDESGPSIVHRKCF
Sbjct:   90 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTVEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALYQPSFLGMEAVGIHETTFNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPDGKYSVWIGGSILASLSTFHEMWISKQEYDESGPSIVHRKCF 309
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACT3_DIPDE (Actin-3 OS=Diphyllobothrium dendriticum GN=ACT3 PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 8.379e-108
Identity = 187/220 (85.00%), Postives = 205/220 (93.18%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGV+HTVPIYEGYALPHAILRLD+AGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+  A SSS++EK YELPDGQ+ITIG ERFRCPE LFQP+ +G+E+ GIHETTYNSIMKCD+DIRKDLY N VLSGGSTM+PGIADRM KEI+ALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct:  158 GDGVTHTVPIYEGYALPHAILRLDMAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMSNAASSSALEKTYELPDGQVITIGNERFRCPEALFQPNFLGLESVGIHETTYNSIMKCDLDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 377
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACT2_ARTSX (Actin, clone 211 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 8.379e-108
Identity = 188/220 (85.45%), Postives = 204/220 (92.73%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGVSHTVPIYEGYALPHAILRLDLAGRDL D LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA +S+S+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHET YNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  157 GDGVSHTVPIYEGYALPHAILRLDLAGRDLIDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.094e-107
Identity = 190/220 (86.36%), Postives = 203/220 (92.27%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGVSHTVPIYEGYALPHAI+RLDLAGRDLTD LM IL ERGY FTTTAEREIVRD+KEKL YVALDYEQE+  + +SS  EKNYELPDGQ IT+G ERFRCPEVLFQP L+G E+ G+HETT+NSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRMSKEITA+APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  159 GDGVSHTVPIYEGYALPHAIMRLDLAGRDLTDNLMTILMERGYNFTTTAEREIVRDIKEKLCYVALDYEQEMANSLTSSQNEKNYELPDGQQITVGNERFRCPEVLFQPGLLGQESVGVHETTFNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMSKEITAVAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTS_ORYLA (Actin, alpha skeletal muscle OS=Oryzias latipes GN=acta1 PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.094e-107
Identity = 187/220 (85.00%), Postives = 204/220 (92.73%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGV+H VP+YEGYALPHAI+RLDLAGRDLTD LMKILTERGY F TTAEREIVRD+KEKL YVALD+E E+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  158 GDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTS_OREMO (Actin, alpha skeletal muscle OS=Oreochromis mossambicus GN=acta1 PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.094e-107
Identity = 187/220 (85.00%), Postives = 204/220 (92.73%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGV+H VP+YEGYALPHAI+RLDLAGRDLTD LMKILTERGY F TTAEREIVRD+KEKL YVALD+E E+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  158 GDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTSA_TAKRU (Actin, alpha skeletal muscle A OS=Takifugu rubripes GN=acta1a PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.094e-107
Identity = 187/220 (85.00%), Postives = 204/220 (92.73%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGV+H VP+YEGYALPHAI+RLDLAGRDLTD LMKILTERGY F TTAEREIVRD+KEKL YVALD+E E+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  158 GDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTF_STRPU (Actin, cytoskeletal 3B OS=Strongylocentrotus purpuratus GN=CYIIIB PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.094e-107
Identity = 190/220 (86.36%), Postives = 203/220 (92.27%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGVSHTVPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+E+E++TA SSSS+EK+YELPDGQ+ITIG ERFRC E L QPS IGME+AGIHET YNSIMKCDVDIRKDLY N VLSG STMFPGIADRM KEI ALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  157 GDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEEEMQTAASSSSLEKSYELPDGQVITIGNERFRCSETLLQPSFIGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGASTMFPGIADRMQKEIVALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of EY659349 vs. ExPASy Swiss-Prot
Match: ACTC_STYPL (Actin, cytoplasmic OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.094e-107
Identity = 188/220 (85.45%), Postives = 203/220 (92.27%), Query Frame = 3 
Query:   12 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 671
            GDGVSHTVPIYEGYALPHAI RLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YV LD+E E+ TA SSS +EK+YELPDGQ+ITIG ERFRCPE +FQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  156 GDGVSHTVPIYEGYALPHAIFRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVGLDFESEMGTASSSSVLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of EY659349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 486
Match NameE-valueIdentityDescription
ACTC_TAKRU8.379e-10885.45Actin, alpha cardiac OS=Takifugu rubripes PE=2 SV=... [more]
ACT3_ECHGR8.379e-10885.91Actin-3 (Fragment) OS=Echinococcus granulosus GN=A... [more]
ACT3_DIPDE8.379e-10885.00Actin-3 OS=Diphyllobothrium dendriticum GN=ACT3 PE... [more]
ACT2_ARTSX8.379e-10885.45Actin, clone 211 OS=Artemia sp. PE=2 SV=1[more]
ACT_SCHDU1.094e-10786.36Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACTS_ORYLA1.094e-10785.00Actin, alpha skeletal muscle OS=Oryzias latipes GN... [more]
ACTS_OREMO1.094e-10785.00Actin, alpha skeletal muscle OS=Oreochromis mossam... [more]
ACTSA_TAKRU1.094e-10785.00Actin, alpha skeletal muscle A OS=Takifugu rubripe... [more]
ACTF_STRPU1.094e-10786.36Actin, cytoskeletal 3B OS=Strongylocentrotus purpu... [more]
ACTC_STYPL1.094e-10785.45Actin, cytoplasmic OS=Styela plicata PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659349 ID=EY659349; Name=EY659349; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGGTGATGGTGTCTCTCATACTGTACCAATCTATGAGGGA
TATGCCCTTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCT
CACTGATGCATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCA
CCACAGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTAT
GTTGCCCTAGACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATC
TGTTGAGAAGAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAG
CTGAAAGATTCCGTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGA
ATGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGAAGTG
TGATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGG
GTTCAACTATGTTCCCTGGTATTGCCGACCGTATGAGCAAGGAAATCACA
GCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAG
AAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCT
TCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCC
ATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGT
TCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAG
TTGGTTGACATGGAGAAGTGCTAAGGATGGGGCCATTGAANGAGGCATAT
CTCGATATTTGATGTATTATACAGCTTCTTACAGCGTTTGAGGGGGGCTT
TATTCTGTACTCACCATCTTCCNTTGCTTGCATTCATCT
back to top