Overview
Name EY659338
Unique Name EY659338
Type EST
Organism Citrus sinensis (Sweet orange)
Sequence length 918
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659338 vs. ExPASy Swiss-Prot
Match:
SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)
HSP 1 Score: 68.1662 bits (165), Expect = 7.701e-11
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 2
Query: 134 CK--KLRDIGLTGNPLNGILPSSIGNLSMSLKTLYIGNCSISGNIPQSIGXXXXXXXXXXXXXXXTGPIPTTFGRLQKLQGLYLAFNKLVGSFPDELCHLGRLDKLVLFGNKLSGSIPSCLSNLTSLRSLYLGSNRFTSVI 550
CK + ++ L+G L G + NL SL T + ++ GNIP + G +P + +++ LQ + L NKL G PD L +L+ L NKLSG +P +NLTSL+ L+L NRFT I
Sbjct: 65 CKGSSVTELQLSGFELGGSRGYLLSNLK-SLTTFDLSKNNLKGNIPYQL--PPNIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGDI 202
The following BLAST results are available for this feature:
BLAST of EY659338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 91
100 200 300 400 500 600 700 800 900 Expect = 7.70e-11 / Id = 33.33 Sequence SRF5_ARATH
Match Name E-value Identity Description
SRF5_ARATH 7.701e-11 33.33 Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
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Properties
Property Name Value
Genbank description CS00-C1-101-002-A11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>EY659338 ID=EY659338; Name=EY659338; organism=Citrus sinensis; type=EST; length=918bp CCACGCGTCCGCATTTTCGGGATTTATTCCAAACACAATTGGTAATTTAA GAAACCTTGAGTGGCTCGGCTTGGGTAATAACTACTTGACATCTTCAACC TCAAAATTGAGCTTTCTTTCCTCTTTGGCAAATTGCAAGAAATTAAGAGA CATAGGCTTAACAGGCAATCCACTCAACGGTATCCTTCCAAGTTCAATAG GTAATCTTTCCATGTCTTTGAAAACACTTTACATCGGCAATTGCAGTATT AGTGGCAACATTCCTCAATCAATTGGCAATTTAAGCAACTTATTGGCCTT AGTATTAGAACTCAATAAATTGACTGGACCTATCCCAACTACATTCGGCC GACTGCAGAAACTCCAAGGCTTATATCTTGCATTCAATAAGTTGGTAGGT TCATTCCCAGATGAGCTTTGCCATCTAGGAAGGCTGGATAAATTGGTCTT ATTTGGCAATAAGCTTTCAGGATCTATACCTTCATGCTTAAGTAATCTCA CTTCTCTGAGATCTCTCTACTTAGGGTCCAATAGGTTTACTTCTGTCATT CCCTCAACTTTCTGGAGCCTAAAAGACATCTTGTTCTTTGACTTTTCATC AAATTTCTTGGTGGGTCCTCTTTCTTCAGACATAGGTAATTTGAAGGTGC TTCTAGGAATAAATTTATCAGAAAATAACTTATCGGGTGATATGCCAGCC ACAATTGGAGGACTGAAAGATCTTCAAATTATGGACCTAGCATATAATAG ATTGGAAGGCCCANTNCTGNANNTCATTGTGACTTTGATAGTTTAGAAAG TTTGAATTTGTCAAATATAAAATCTCCGGGTCTATTCCAAAATCCNTGGG GAACTCTTTTACCTCGAGAAGTAATCTCTCTTTCATGAACTAGAAGTGAG ATTCTAGTGGAGAATTTT back to top