EY705313 | Citrus Genome Database

Overview


Name	EY705313
Unique Name	EY705313
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAAN (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain N315) GN=ndk PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAAM (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ndk PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAAE (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Newman) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAAC (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain COL) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149

The following BLAST results are available for this feature:

BLAST of EY705313 vs. ExPASy Swiss-Prot

BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_STAAR	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAN	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAM	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAE	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAC	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAAB	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA9	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA8	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA3	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]
NDK_STAA2	2.865e-22	53.62	Nucleoside diphosphate kinase OS=Staphylococcus au...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT