EY705313

Overview
NameEY705313
Unique NameEY705313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.865e-22
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAP 69          

HSP 2 Score: 48.521 bits (114), Expect = 2.865e-22
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARDRKD-EINCGSNPKTG*LHKHA---EKWVYE 851
            V AMV EGE ++   R +IG+T+P ++ PG+IRGDL   V RN   G  + +  + EIN   N     +  +A   + W+YE
Sbjct:   70 VFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE--ITSYASPRDAWLYE 149          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.126e-22
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ERT +A+KPDGVQR L+  +I RFER+GFKLV +K++   +    +HY DL+ +PF+  L  ++SSGP  ++ W G
Sbjct:   37 ERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEG 112          

HSP 2 Score: 43.5134 bits (101), Expect = 8.126e-22
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RN 746
            V+AMVWEG   +   R +IG TD  ++ PG IRGD +  + RN
Sbjct:  105 VVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRN 147          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_METHJ (Nucleoside diphosphate kinase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.809e-21
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPS--LPWYGKE 642
            MERTF+ +KPDGVQRGLI E+I+RFER+GFK+VA +          +HY +  ++PFF GL  +++SGP   + W GK+
Sbjct:    1 MERTFLMVKPDGVQRGLIGEVITRFERRGFKMVASRFEKLPDARVMEHYAEHVQKPFFPGLKAYITSGPCFLMVWEGKD 79          

HSP 2 Score: 41.9726 bits (97), Expect = 1.809e-21
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  627 MVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            MVWEG+  +   R +IGAT+P  + PG IRGD A
Sbjct:   73 MVWEGKDIVKISRDMIGATNPAGAAPGTIRGDYA 106          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDKM_HUMAN (Nucleoside diphosphate kinase, mitochondrial OS=Homo sapiens GN=NME4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.327e-21
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ERT +A+KPDGVQR L+ ++I RFER+GF LV +K++   +    +HY DL+ +PF+  L  ++SSGP  ++ W G
Sbjct:   38 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEG 113          

HSP 2 Score: 43.1282 bits (100), Expect = 2.327e-21
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RN 746
            V+AMVWEG   +   R +IG TD  ++ PG IRGD +  + RN
Sbjct:  106 VVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRN 148          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAHJ (Nucleoside diphosphate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.353e-21
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD +QR L+ EIISR ERKG KLV  K++   +  A++HY +  ++PF+  L  F++S P
Sbjct:    1 MERTFLMIKPDAIQRNLVGEIISRIERKGLKLVGAKLMTVPQALAEEHYSEHTDKPFYGKLISFITSAP 69          

HSP 2 Score: 46.2098 bits (108), Expect = 2.353e-21
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMV EGE ++   R +IG T+P ++ PG+IRGDL   V RN   G
Sbjct:   70 VFAMVVEGEDAVDVSRHIIGKTNPSEATPGSIRGDLGLTVGRNVIHG 116          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.009e-21
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ME+TF+ +KPDGV+RGLI EII+R ERKGF +  +K++  ++E AQ HY +  E+PFF  L  FL+SGP
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGP 69          

HSP 2 Score: 40.817 bits (94), Expect = 4.009e-21
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+A+  EGE  +T  R +IG T P ++ PG IRGD A  +  N   G
Sbjct:   70 VVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFANTMSENVIHG 116          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK8_HUMAN (Putative nucleoside diphosphate kinase OS=Homo sapiens GN=NME2P1 PE=5 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.009e-21
Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  448 VQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            +Q GL+ +II RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGP  ++ W G
Sbjct:    1 MQCGLVGKIIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 65          

HSP 2 Score: 51.2174 bits (121), Expect = 4.009e-21
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGV-MARDRKDEINCGSNPKTG*LHKH-AEKWVYE 851
            V+AMVWEG   +  GR ++G T+P  S+PG IRGD    V RN   G    +  + EI+    P+    +K  A  WVYE
Sbjct:   58 VVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLRFKPEELVDYKSCAHDWVYE 137          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAS1 (Nucleoside diphosphate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.182e-21
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI EIISR ERKG KLV  K +   +  A++HY +  ++PF+  L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIERKGLKLVGGKFMTVPQSLAEEHYAEHTDKPFYKHLISFITSAP 69          

HSP 2 Score: 46.2098 bits (108), Expect = 5.182e-21
Identity = 30/80 (37.50%), Postives = 39/80 (48.75%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGV-MARDRKDEINCG-SNPKTG*LHKHAEKWVYE 851
            V AMV EGE ++   R +IG T+P ++ PG IRGDL   V RN   G         EIN      +     +  E W+YE
Sbjct:   70 VFAMVVEGEDAVHVARHIIGKTNPSEATPGTIRGDLGLTVGRNIIHGSDSVESANKEINLWFKADELSEYSESRESWLYE 149          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_IGNH4 (Nucleoside diphosphate kinase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.189e-21
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MER F+ IKPDGV+RGL+ EIISR ERKG K+VA+K++   +E A++ Y + K +PFF+ L  +++SGP
Sbjct:    1 MEREFVMIKPDGVKRGLVGEIISRIERKGLKIVAMKMLKLDREMAERLYEEHKGKPFFDDLISYVTSGP 69          

HSP 2 Score: 40.4318 bits (93), Expect = 5.189e-21
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+AMV EG  ++   R++IG TD  K+ PG IRGD A
Sbjct:   70 VVAMVVEGPNAVEVMRRMIGDTDGAKAAPGTIRGDFA 106          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SULIY (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.216e-21
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            M+RTF+ IKPDGV+RGLI EIISRFE++G K+V++K+V  S++ A+K Y + K + FF  L  +++SGP
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGP 71          

HSP 2 Score: 40.817 bits (94), Expect = 5.216e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+ MV EG+  +   R++IG TDP+++ PG IRGD A
Sbjct:   72 VVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYA 108          
The following BLAST results are available for this feature:
BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAA12.865e-2253.62Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDKM_MOUSE8.126e-2247.37Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]
NDK_METHJ1.809e-2149.37Nucleoside diphosphate kinase OS=Methanospirillum ... [more]
NDKM_HUMAN2.327e-2146.05Nucleoside diphosphate kinase, mitochondrial OS=Ho... [more]
NDK_STAHJ2.353e-2149.28Nucleoside diphosphate kinase OS=Staphylococcus ha... [more]
NDK_EXIS24.009e-2155.07Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK8_HUMAN4.009e-2150.77Putative nucleoside diphosphate kinase OS=Homo sap... [more]
NDK_STAS15.182e-2152.17Nucleoside diphosphate kinase OS=Staphylococcus sa... [more]
NDK_IGNH45.189e-2153.62Nucleoside diphosphate kinase OS=Ignicoccus hospit... [more]
NDK_SULIY5.216e-2153.62Nucleoside diphosphate kinase OS=Sulfolobus island... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT
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