EY705313 | Citrus Genome Database

Overview


Name	EY705313
Unique Name	EY705313
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SULIN (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=ndk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.216e-21
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            M+RTF+ IKPDGV+RGLI EIISRFE++G K+V++K+V  S++ A+K Y + K + FF  L  +++SGP
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGP 71

HSP 2 Score: 40.817 bits (94), Expect = 5.216e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+ MV EG+  +   R++IG TDP+++ PG IRGD A
Sbjct:   72 VVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYA 108

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SULIM (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.216e-21
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            M+RTF+ IKPDGV+RGLI EIISRFE++G K+V++K+V  S++ A+K Y + K + FF  L  +++SGP
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGP 71

HSP 2 Score: 40.817 bits (94), Expect = 5.216e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+ MV EG+  +   R++IG TDP+++ PG IRGD A
Sbjct:   72 VVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYA 108

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SULIL (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.216e-21
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            M+RTF+ IKPDGV+RGLI EIISRFE++G K+V++K+V  S++ A+K Y + K + FF  L  +++SGP
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGP 71

HSP 2 Score: 40.817 bits (94), Expect = 5.216e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+ MV EG+  +   R++IG TDP+++ PG IRGD A
Sbjct:   72 VVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYA 108

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SULIK (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=ndk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.216e-21
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            M+RTF+ IKPDGV+RGLI EIISRFE++G K+V++K+V  S++ A+K Y + K + FF  L  +++SGP
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGP 71

HSP 2 Score: 40.817 bits (94), Expect = 5.216e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+ MV EG+  +   R++IG TDP+++ PG IRGD A
Sbjct:   72 VVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYA 108

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SULIA (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.16.27) GN=ndk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.216e-21
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            M+RTF+ IKPDGV+RGLI EIISRFE++G K+V++K+V  S++ A+K Y + K + FF  L  +++SGP
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELVNYVTSGP 71

HSP 2 Score: 40.817 bits (94), Expect = 5.216e-21
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+ MV EG+  +   R++IG TDP+++ PG IRGD A
Sbjct:   72 VVCMVIEGDDVVQVIRRMIGNTDPKEAPPGTIRGDYA 108

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAES (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ndk PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.742e-21
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI EIISR E+KG KLV  K +    E A+KHY + + +PF++ L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAP 69

HSP 2 Score: 45.0542 bits (105), Expect = 6.742e-21
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMV EGE ++   RK+IG+T+P ++ PG IRGD    + RN   G
Sbjct:   70 VFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHG 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.742e-21
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPD VQR LI EIISR E+KG KLV  K +    E A+KHY + + +PF++ L  F++S P
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAP 69

HSP 2 Score: 45.0542 bits (105), Expect = 6.742e-21
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMV EGE ++   RK+IG+T+P ++ PG IRGD    + RN   G
Sbjct:   70 VFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHG 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.742e-21
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ME+TFI +KPD VQRGL+ +II+RFE KG KLV +K++   +  A++HY + K + FF    +++ S P  ++ W GK
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGK 78

HSP 2 Score: 47.3654 bits (111), Expect = 6.742e-21
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMVWEG+  +   R+L+GAT+P  + PG+IRG     + RN   G
Sbjct:   70 VVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHG 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.742e-21
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ME+TFI +KPD VQRGL+ +II+RFE KG KLV +K++   +  A++HY + K + FF    +++ S P  ++ W GK
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGK 78

HSP 2 Score: 47.3654 bits (111), Expect = 6.742e-21
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMVWEG+  +   R+L+GAT+P  + PG+IRG     + RN   G
Sbjct:   70 VVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHG 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.829e-21
Identity = 36/69 (52.17%), Postives = 55/69 (79.71%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF  IKPDGV+RGL  EI++R ++KG+++V +K ++ S+E A++HY + +ERPFF  L +F++SGP
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGP 69

HSP 2 Score: 37.7354 bits (86), Expect = 8.829e-21
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+A+  EGE +I   R ++GAT+P  + PG IR D A
Sbjct:   70 VVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFA 106

The following BLAST results are available for this feature:

BLAST of EY705313 vs. ExPASy Swiss-Prot

BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_SULIN	5.216e-21	53.62	Nucleoside diphosphate kinase OS=Sulfolobus island...	[more]
NDK_SULIM	5.216e-21	53.62	Nucleoside diphosphate kinase OS=Sulfolobus island...	[more]
NDK_SULIL	5.216e-21	53.62	Nucleoside diphosphate kinase OS=Sulfolobus island...	[more]
NDK_SULIK	5.216e-21	53.62	Nucleoside diphosphate kinase OS=Sulfolobus island...	[more]
NDK_SULIA	5.216e-21	53.62	Nucleoside diphosphate kinase OS=Sulfolobus island...	[more]
NDK_STAES	6.742e-21	53.62	Nucleoside diphosphate kinase OS=Staphylococcus ep...	[more]
NDK_STAEQ	6.742e-21	53.62	Nucleoside diphosphate kinase OS=Staphylococcus ep...	[more]
NDK_DESHY	6.742e-21	44.87	Nucleoside diphosphate kinase OS=Desulfitobacteriu...	[more]
NDK_DESHD	6.742e-21	44.87	Nucleoside diphosphate kinase OS=Desulfitobacteriu...	[more]
NDK_DEIGD	8.829e-21	52.17	Nucleoside diphosphate kinase OS=Deinococcus geoth...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT