EY705313 | Citrus Genome Database

Overview


Name	EY705313
Unique Name	EY705313
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.272e-14
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ++RTF  IKPD V + +I +I+SRFE  G ++VA K+   SK  A+  Y +  ER FF  L  F++SGP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKIVSRFEEAGLRVVASKMKQLSKAEAEGFYAEHSERGFFGELVAFMTSGP 71

HSP 2 Score: 39.6614 bits (91), Expect = 1.272e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EGE +I   R+L+GAT+P+++  G IR D A  +  N+  G
Sbjct:   72 VVVQVLEGENAIVRNRELMGATNPKEAAAGTIRADFAESIDANAVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_HELP2 (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain P12) GN=ndk PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.275e-14
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1

Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +RT   IKPD +++ ++ +II RFE  G ++VA+K +  S + A+  Y   +ERPFF  L EF+ SGP
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGP 70

HSP 2 Score: 42.3578 bits (98), Expect = 1.275e-14
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ MV EGE ++   R L+GATDP+ ++ G IR D A  +  N+  G
Sbjct:   71 VVVMVLEGEDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_TREPS (Nucleoside diphosphate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=ndk PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.643e-14
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1

Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            E TF+ +KP  +QR L+ E++SRFERKG  L A++++      A+ HY + +E+PF+  L  +++S P
Sbjct:    4 ETTFVMLKPGVLQRRLVGEVLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLIAYITSAP 71

HSP 2 Score: 36.965 bits (84), Expect = 1.643e-14
Identity = 16/37 (43.24%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+A+ ++GE +I+  R L G+T  + ++PG IRGD A
Sbjct:   72 VVALAFKGENAISLVRTLCGSTRVEHAQPGTIRGDFA 108

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_TREPA (Nucleoside diphosphate kinase OS=Treponema pallidum GN=ndk PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.643e-14
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1

Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            E TF+ +KP  +QR L+ E++SRFERKG  L A++++      A+ HY + +E+PF+  L  +++S P
Sbjct:    4 ETTFVMLKPGVLQRRLVGEVLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLIAYITSAP 71

HSP 2 Score: 36.965 bits (84), Expect = 1.643e-14
Identity = 16/37 (43.24%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+A+ ++GE +I+  R L G+T  + ++PG IRGD A
Sbjct:   72 VVALAFKGENAISLVRTLCGSTRVEHAQPGTIRGDFA 108

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_ERWT9 (Nucleoside diphosphate kinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ndk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.649e-14
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  +KP+ V + +I  I SRFE  GFK+V  K++  SKE A+  Y + + +PFF+GL EF++SGP
Sbjct:    3 IERTFSIVKPNAVAKNVIGAIFSRFESAGFKIVGSKMLHLSKEQAEGFYAEHQGKPFFDGLVEFMTSGP 71

HSP 2 Score: 31.5722 bits (70), Expect = 1.649e-14
Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EG+ ++   R L+GAT+P  +  G +R D A     N+  G
Sbjct:   72 VVVSVLEGDNAVQRHRDLMGATNPANALAGTLRADYADSFTENATHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SHEPA (Nucleoside diphosphate kinase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.649e-14
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V +  I  I +RFE  G K++A K++  SKE A+  Y +  ERPFF  L  F++SGP
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMIHLSKEQAEGFYAEHSERPFFGALVAFMTSGP 71

HSP 2 Score: 34.2686 bits (77), Expect = 1.649e-14
Identity = 15/47 (31.91%), Postives = 27/47 (57.45%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++    EGE ++   R+++GAT+P ++  G IR D A  +  N+  G
Sbjct:   72 IMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PSEHT (Nucleoside diphosphate kinase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.649e-14
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  +KPD V +  I  I +RFE  G K+VA K+V  S+E A+  Y +  ERPFF  L  F++SGP
Sbjct:    3 LERTFSIVKPDAVAKNHIGAIYNRFETAGLKIVAAKMVHLSQEKAEGFYAEHSERPFFGALVSFMTSGP 71

HSP 2 Score: 34.2686 bits (77), Expect = 1.649e-14
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EGE ++   R+++GAT+P  +  G +R D A  +  N+  G
Sbjct:   72 VMVTVLEGENAVLKNREIMGATNPADALAGTLRADYADSIDENAVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SALRD (Nucleoside diphosphate kinase OS=Salinibacter ruber (strain DSM 13855) GN=ndk PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.649e-14
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1

Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSLP 627
            ERT   +KPD V++  + E++ R +  GF+L A+K++  SK  A+  Y   +++PFF+ L +F+SSGP +P
Sbjct:    4 ERTLAILKPDCVRKEKVGEVLRRIQDAGFQLCAMKMITMSKAEAEGFYAVHEDKPFFDDLTDFMSSGPCVP 74

HSP 2 Score: 38.5058 bits (88), Expect = 1.649e-14
Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = 3

Query:  621 IAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            + +V E E +I   R+LIGATDP ++  G IR D AG +  N   G
Sbjct:   73 VPVVLEKENAIADFRELIGATDPDEAAEGTIRSDFAGSIQENIVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SHESW (Nucleoside diphosphate kinase OS=Shewanella sp. (strain W3-18-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.649e-14
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGP 71

HSP 2 Score: 38.891 bits (89), Expect = 1.649e-14
Identity = 17/47 (36.17%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE ++   R+++GAT+P ++ PG IR D A  +  N+  G
Sbjct:   72 IMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SHESR (Nucleoside diphosphate kinase OS=Shewanella sp. (strain MR-7) GN=ndk PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.649e-14
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGP 71

HSP 2 Score: 38.891 bits (89), Expect = 1.649e-14
Identity = 17/47 (36.17%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE ++   R+++GAT+P ++ PG IR D A  +  N+  G
Sbjct:   72 IMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAQSIDENAAHG 118

The following BLAST results are available for this feature:

BLAST of EY705313 vs. ExPASy Swiss-Prot

BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_PSEF5	1.272e-14	44.93	Nucleoside diphosphate kinase OS=Pseudomonas fluor...	[more]
NDK_HELP2	1.275e-14	42.65	Nucleoside diphosphate kinase OS=Helicobacter pylo...	[more]
NDK_TREPS	1.643e-14	39.71	Nucleoside diphosphate kinase OS=Treponema pallidu...	[more]
NDK_TREPA	1.643e-14	39.71	Nucleoside diphosphate kinase OS=Treponema pallidu...	[more]
NDK_ERWT9	1.649e-14	47.83	Nucleoside diphosphate kinase OS=Erwinia tasmanien...	[more]
NDK_SHEPA	1.649e-14	47.83	Nucleoside diphosphate kinase OS=Shewanella pealea...	[more]
NDK_PSEHT	1.649e-14	47.83	Nucleoside diphosphate kinase OS=Pseudoalteromonas...	[more]
NDK_SALRD	1.649e-14	39.44	Nucleoside diphosphate kinase OS=Salinibacter rube...	[more]
NDK_SHESW	1.649e-14	46.38	Nucleoside diphosphate kinase OS=Shewanella sp. (s...	[more]
NDK_SHESR	1.649e-14	46.38	Nucleoside diphosphate kinase OS=Shewanella sp. (s...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT