EY705313 | Citrus Genome Database

Overview


Name	EY705313
Unique Name	EY705313
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_KLEP3 (Nucleoside diphosphate kinase OS=Klebsiella pneumoniae (strain 342) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.619e-14
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKP+ V + +I  I SRFE  GFK+V  K++  + E A+  Y + + RPFF+GL EF++SGP
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGP 71

HSP 2 Score: 32.3426 bits (72), Expect = 3.619e-14
Identity = 14/37 (37.84%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            ++  V EGE ++   R L+GAT+P  +  G +R D A
Sbjct:   72 IVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYA 108

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SHEPW (Nucleoside diphosphate kinase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.619e-14
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  S+E A+  Y +  ERPFF  L  F++SGP
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGP 71

HSP 2 Score: 34.2686 bits (77), Expect = 3.619e-14
Identity = 15/47 (31.91%), Postives = 27/47 (57.45%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++    EGE ++   R+++GAT+P ++  G IR D A  +  N+  G
Sbjct:   72 IMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SHEHH (Nucleoside diphosphate kinase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.619e-14
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  S+E A+  Y +  ERPFF  L  F++SGP
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGP 71

HSP 2 Score: 34.2686 bits (77), Expect = 3.619e-14
Identity = 15/47 (31.91%), Postives = 27/47 (57.45%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++    EGE ++   R+++GAT+P ++  G IR D A  +  N+  G
Sbjct:   72 IMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PSEPG (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain GB-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.627e-14
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ++RTF  IKPD V + +I +I +RFE  G K+VA KI   SK  A+  Y +   R FF  L  F++SGP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGP 71

HSP 2 Score: 40.0466 bits (92), Expect = 3.627e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EGE +I   R+L+GAT+P+++  G IR D A  +  N+  G
Sbjct:   72 VVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PSEFS (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=ndk PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.627e-14
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ++RTF  IKPD V + +I EI +RFE+ G K+VA K+   SK  A+  Y +   R FF  L  F+ SGP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLKVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGP 71

HSP 2 Score: 40.0466 bits (92), Expect = 3.627e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EGE +I   R+L+GAT+P+++  G IR D A  +  N+  G
Sbjct:   72 VVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_HELPY (Nucleoside diphosphate kinase OS=Helicobacter pylori GN=ndk PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.636e-14
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1

Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +RT   IKPD +++ ++ +II RFE  G ++VA+K +  S + A+  Y   +ERPFF  L EF+ SGP
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGP 70

HSP 2 Score: 40.817 bits (94), Expect = 3.636e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ MV EG+ ++   R L+GATDP+ ++ G IR D A  +  N+  G
Sbjct:   71 VVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.703e-14
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKP+ V    I  I +RFE  GF ++A K++  +KE A+  Y + K RPFF+GL EF++SGP
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGP 71

HSP 2 Score: 31.9574 bits (71), Expect = 4.703e-14
Identity = 15/47 (31.91%), Postives = 25/47 (53.19%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE ++   R ++GAT+P  +  G +R D A     N+  G
Sbjct:   72 IMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PECCP (Nucleoside diphosphate kinase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.703e-14
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  +KP+ V +  I  I +RFE  GF LVA K++  S+E A+  Y + K +PFF+GL EF+ SGP
Sbjct:    3 IERTFSIVKPNAVAKNAIGSIYARFESAGFTLVAAKMLRLSREQAEGFYAEHKGKPFFDGLVEFMMSGP 71

HSP 2 Score: 31.9574 bits (71), Expect = 4.703e-14
Identity = 15/47 (31.91%), Postives = 25/47 (53.19%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE ++   R ++GAT+P  +  G +R D A     N+  G
Sbjct:   72 IMVQVLEGENAVQRNRDIMGATNPANALAGTLRADYADSFTANAVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_VIBCM (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.703e-14
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  S+E A   Y + + +PFF  L EF++SGP
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGP 71

HSP 2 Score: 33.113 bits (74), Expect = 4.703e-14
Identity = 17/47 (36.17%), Postives = 28/47 (59.57%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE +I   R+L+G T+P+++  G +R D A  +  NS  G
Sbjct:   72 IMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYALSMRYNSVHG 118

[Close]

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_VIBCH (Nucleoside diphosphate kinase OS=Vibrio cholerae GN=ndk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.703e-14
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  IKPD V+R LI EI  R E+ G +++A K+V  S+E A   Y + + +PFF  L EF++SGP
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGP 71

HSP 2 Score: 33.113 bits (74), Expect = 4.703e-14
Identity = 17/47 (36.17%), Postives = 28/47 (59.57%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE +I   R+L+G T+P+++  G +R D A  +  NS  G
Sbjct:   72 IMVQVLEGENAIARYRELMGKTNPEEAACGTLRADYALSMRYNSVHG 118

The following BLAST results are available for this feature:

BLAST of EY705313 vs. ExPASy Swiss-Prot

BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_KLEP3	3.619e-14	47.83	Nucleoside diphosphate kinase OS=Klebsiella pneumo...	[more]
NDK_SHEPW	3.619e-14	47.83	Nucleoside diphosphate kinase OS=Shewanella piezot...	[more]
NDK_SHEHH	3.619e-14	47.83	Nucleoside diphosphate kinase OS=Shewanella halifa...	[more]
NDK_PSEPG	3.627e-14	44.93	Nucleoside diphosphate kinase OS=Pseudomonas putid...	[more]
NDK_PSEFS	3.627e-14	44.93	Nucleoside diphosphate kinase OS=Pseudomonas fluor...	[more]
NDK_HELPY	3.636e-14	42.65	Nucleoside diphosphate kinase OS=Helicobacter pylo...	[more]
NDK_YERP3	4.703e-14	47.83	Nucleoside diphosphate kinase OS=Yersinia pseudotu...	[more]
NDK_PECCP	4.703e-14	47.83	Nucleoside diphosphate kinase OS=Pectobacterium ca...	[more]
NDK_VIBCM	4.703e-14	47.83	Nucleoside diphosphate kinase OS=Vibrio cholerae s...	[more]
NDK_VIBCH	4.703e-14	47.83	Nucleoside diphosphate kinase OS=Vibrio cholerae G...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT