EY705313

Overview
NameEY705313
Unique NameEY705313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_HELPS (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain Shi470) GN=ndk PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.725e-14
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +RT   IKPD +++ ++ +II RFE  G +++A+K +  S + A+  Y   +ERPFF  L EF+ SGP
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGP 70

HSP 2 Score: 40.817 bits (94), Expect = 4.725e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ MV EG+ ++   R L+GATDP+ ++ G IR D A  +  N+  G
Sbjct:   71 VVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_HELPH (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain HPAG1) GN=ndk PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.725e-14
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +RT   IKPD +++ ++ +II RFE  G +++A+K +  S + A+  Y   +ERPFF  L EF+ SGP
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGP 70

HSP 2 Score: 40.817 bits (94), Expect = 4.725e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ MV EG+ ++   R L+GATDP+ ++ G IR D A  +  N+  G
Sbjct:   71 VVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_HELPG (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain G27) GN=ndk PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.725e-14
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +RT   IKPD +++ ++ +II RFE  G +++A+K +  S + A+  Y   +ERPFF  L EF+ SGP
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGP 70

HSP 2 Score: 40.817 bits (94), Expect = 4.725e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ MV EG+ ++   R L+GATDP+ ++ G IR D A  +  N+  G
Sbjct:   71 VVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_HELAH (Nucleoside diphosphate kinase OS=Helicobacter acinonychis (strain Sheeba) GN=ndk PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.725e-14
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +RT   IKPD +++ ++ +II RFE  G +++A+K +  S + A+  Y   +ERPFF  L EF+ SGP
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGP 70

HSP 2 Score: 40.817 bits (94), Expect = 4.725e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ MV EG+ ++   R L+GATDP+ ++ G IR D A  +  N+  G
Sbjct:   71 VVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHG 117
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PYRKO (Nucleoside diphosphate kinase OS=Pyrococcus kodakaraensis GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSLPWYGKER---XVLRMVANSLEPQ 684
            +ERT I +KPD V RGL+ EIISRFE++G K+V +K++   ++ A+KHY + K +PFF  L ++++  PS+    + R    V+R +A + +P+
Sbjct:    6 IERTLIILKPDAVVRGLMGEIISRFEKRGLKIVGMKMIWIDRKLAEKHYAEHKGKPFFEPLIDYITKAPSVVMVVEGRYAISVVRKMAGATDPK 99
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_METKA (Nucleoside diphosphate kinase OS=Methanopyrus kandleri GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSLPWYGKERXVLRMVAN 669
            ++R F+ IKPDGV RGL+ E+I R ERKG K+VA+++    +E A+K Y + +++PFF  L E+++SGP +    + R  +++V N
Sbjct:    4 VQREFVMIKPDGVVRGLVGEVIRRLERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFEDLIEYVTSGPVVVMIVEGRKAVKVVRN 89
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_CLOPE (Nucleoside diphosphate kinase OS=Clostridium perfringens GN=ndk PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.111e-14
Identity = 26/69 (37.68%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +E++ + IKPD V+R LI +I+  +E  G K+ A+++   +KEFA+KHY + +++ FFN L ++++  P
Sbjct:    3 LEKSLVLIKPDAVERNLIGKILEVYEGAGLKIKAMEMKQINKEFAEKHYEEHRDKQFFNSLIKYITRSP 71

HSP 2 Score: 34.6538 bits (78), Expect = 6.111e-14
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIR 716
            ++A++ EGE +I   R L GAT+P+K+E G IR
Sbjct:   72 LVALILEGEDAINKIRSLNGATNPEKAEFGTIR 104
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_CLOP1 (Nucleoside diphosphate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ndk PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.111e-14
Identity = 26/69 (37.68%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +E++ + IKPD V+R LI +I+  +E  G K+ A+++   +KEFA+KHY + +++ FFN L ++++  P
Sbjct:    3 LEKSLVLIKPDAVERNLIGKILEVYEGAGLKIKAMEMKQINKEFAEKHYEEHRDKQFFNSLIKYITRSP 71

HSP 2 Score: 34.6538 bits (78), Expect = 6.111e-14
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIR 716
            ++A++ EGE +I   R L GAT+P+K+E G IR
Sbjct:   72 LVALILEGEDAINKIRSLNGATNPEKAEFGTIR 104
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PSEU2 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ndk PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.125e-14
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ++RTF  IKPD V + +I EI +RFE+ G ++VA K+   SK  A+  Y +   R FF  L  F+ SGP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGP 71

HSP 2 Score: 40.4318 bits (93), Expect = 6.125e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EGE +I   R+L+GAT+P+++  G IR D A  +  N+  G
Sbjct:   72 VVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHG 118
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_PSESM (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. tomato GN=ndk PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.125e-14
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ++RTF  IKPD V + +I EI +RFE+ G ++VA K+   SK  A+  Y +   R FF  L  F+ SGP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGP 71

HSP 2 Score: 40.4318 bits (93), Expect = 6.125e-14
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+  V EGE +I   R+L+GAT+P+++  G IR D A  +  N+  G
Sbjct:   72 VVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHG 118
The following BLAST results are available for this feature:
BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HELPS4.725e-1441.18Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]
NDK_HELPH4.725e-1441.18Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]
NDK_HELPG4.725e-1441.18Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]
NDK_HELAH4.725e-1441.18Nucleoside diphosphate kinase OS=Helicobacter acin... [more]
NDK_PYRKO5.704e-1440.43Nucleoside diphosphate kinase OS=Pyrococcus kodaka... [more]
NDK_METKA5.704e-1441.86Nucleoside diphosphate kinase OS=Methanopyrus kand... [more]
NDK_CLOPE6.111e-1437.68Nucleoside diphosphate kinase OS=Clostridium perfr... [more]
NDK_CLOP16.111e-1437.68Nucleoside diphosphate kinase OS=Clostridium perfr... [more]
NDK_PSEU26.125e-1443.48Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSESM6.125e-1443.48Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT
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