EY705313 | Citrus Genome Database

Overview


Name	EY705313
Unique Name	EY705313
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRZT (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRZJ (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain JJA) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRR6 (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRPS (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain CGSP14) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRPN (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRPI (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_STRP2 (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.037e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKI-VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGP L
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVL 72

HSP 2 Score: 32.3426 bits (72), Expect = 1.037e-13
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFM 755
            V+  V  G   I   R ++GAT P+++ PG IRGD A     N  +
Sbjct:   71 VLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEII 116

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_THEAB (Nucleoside diphosphate kinase OS=Thermosipho africanus (strain TCF52B) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSLPWYGKERXVLRMV 663
            MERTF+ +KP+ V+RGL+ EII RFE++G K+VA+K++  SK+ A+K Y   K + F+N L +F++ GP +    +   V+ MV
Sbjct:    1 MERTFVYLKPNAVRRGLVGEIIKRFEQRGIKIVALKLLWMSKQQAEKLYEMHKGKSFYNDLIDFVTGGPIVAMIVEAPRVIEMV 84

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BRUME (Nucleoside diphosphate kinase OS=Brucella melitensis GN=ndk PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.344e-13
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPSL 624
            +ERTF  IKPD  +R L   II++ E  G ++VA K V  S+  A+  Y   K+RPFF  L EF+SSGP++
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTV 73

HSP 2 Score: 33.8834 bits (76), Expect = 1.344e-13
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 3

Query:  621 IAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            +  V EGE +I   R+++GAT+P  ++ G IR   A  +  NS  G
Sbjct:   73 VVQVLEGENAIAKNREVMGATNPANADEGTIRKAFALSIGENSVHG 118

BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_VIBPA (Nucleoside diphosphate kinase OS=Vibrio parahaemolyticus GN=ndk PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.344e-13
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            +ERTF  +KPD V+R LI EI +R E+ G +++A K+V  ++E A   Y + + + FF  L EF++SGP
Sbjct:    3 LERTFSIVKPDAVERNLIGEIYNRIEKAGLRIIAAKMVHLTEEQASGFYAEHEGKEFFQPLKEFMTSGP 71

HSP 2 Score: 34.6538 bits (78), Expect = 1.344e-13
Identity = 17/47 (36.17%), Postives = 28/47 (59.57%), Query Frame = 3

Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            ++  V EGE +I   R+L+G T+P+++  G +R D A  +  NS  G
Sbjct:   72 IMVQVLEGENAIARYRELMGKTNPEEAAAGTLRADYALSMRHNSVHG 118

The following BLAST results are available for this feature:

BLAST of EY705313 vs. ExPASy Swiss-Prot

BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
NDK_STRZT	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_STRZJ	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_STRR6	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_STRPS	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_STRPN	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_STRPI	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_STRP2	1.037e-13	43.06	Nucleoside diphosphate kinase OS=Streptococcus pne...	[more]
NDK_THEAB	1.271e-13	44.05	Nucleoside diphosphate kinase OS=Thermosipho afric...	[more]
NDK_BRUME	1.344e-13	46.48	Nucleoside diphosphate kinase OS=Brucella melitens...	[more]
NDK_VIBPA	1.344e-13	43.48	Nucleoside diphosphate kinase OS=Vibrio parahaemol...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT