EY705313

Overview
NameEY705313
Unique NameEY705313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.726e-27
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            +E T+I IKPDGVQRGL+ EIISRFE+KGFKL+ +K+    KE A++HY DLK + F+  L ++++SGP   + W G
Sbjct:   85 VEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEG 161          

HSP 2 Score: 53.1434 bits (126), Expect = 5.726e-27
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ M WEG   +   RKLIGATDP ++EPG IRGDLA    RN   G
Sbjct:  154 VVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHG 200          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.271e-27
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            MER+F+ +KPDGVQRGLI E+ISR ER+G KLVA K++  S+E A++HY  LK++PFF  L EF++SGP  ++ W G
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEG 77          

HSP 2 Score: 46.595 bits (109), Expect = 8.271e-27
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V+AMVWEG  +I+  RK +GAT+P  +EPG IR D A
Sbjct:   70 VMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFA 106          

HSP 3 Score: 20.4014 bits (41), Expect = 8.271e-27
Identity = 6/8 (75.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  746 LIHGSDGP 769
            ++HGSDGP
Sbjct:  113 VVHGSDGP 120          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.866e-27
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            MERT++ +KPDGVQR LI  I+SRFE+KG+ L A K+V  SKE A+ HY + +ERPFF  L  F++SGP  ++ W G+
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGE 78          

HSP 2 Score: 51.6026 bits (122), Expect = 9.866e-27
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLA 728
            V AMVWEGE  I   R+LIGAT+P ++ PG IRGDLA
Sbjct:   70 VFAMVWEGEGVIKAARQLIGATNPSEAAPGTIRGDLA 106          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-26
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            +E T+I IKPDGVQRGL+ EIISRFE+KGFKL  +K+    KE A++HY DL+ +PFF  L ++++SGP   + W G
Sbjct:   84 VEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEG 160          

HSP 2 Score: 50.8322 bits (120), Expect = 1.263e-26
Identity = 25/47 (53.19%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+ M WEG   +   RKLIGAT+P  +EPG IRGDLA    RN   G
Sbjct:  153 VVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHG 199          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.275e-26
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V  S+E  ++HY +L+E+PF++ L +++SSGP  ++ W G
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQG 97          

HSP 2 Score: 45.8246 bits (107), Expect = 1.275e-26
Identity = 23/47 (48.94%), Postives = 28/47 (59.57%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMVW+G   +   R LIGATDP  + PG IRGD    V +N   G
Sbjct:   90 VVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHG 136          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.141e-26
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  367 EQEVHAAEVL*SLI*MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            E  +    ++ SL  +++ +I +KPDGVQRGL+ EIISRFE+KGFKL  +K+   SKE A++HY  L ++ FF  L E+++SGP  S+ W G
Sbjct:   67 ESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEG 158          

HSP 2 Score: 51.9878 bits (123), Expect = 2.141e-26
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V++M WEG   +   RKLIGATDP ++EPG IRGD A    RN   G
Sbjct:  151 VVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHG 197          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.161e-26
Identity = 43/76 (56.58%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V  S+E  ++HY +L+ERPF+  L ++++SGP  ++ W G
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQG 97          

HSP 2 Score: 45.0542 bits (105), Expect = 2.161e-26
Identity = 30/88 (34.09%), Postives = 40/88 (45.45%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG----------VMARDRKDEINCGSNPKTG*LHKHAEKWVYE 851
            V+AMVW+G   +   R LIGAT+P  + PG IRGD    V +N   G          +    R DE+ C  +         A  W+YE
Sbjct:   90 VVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWED--------SAGHWLYE 169          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.676e-26
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL  F++SGP
Sbjct:    9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGP 76          

HSP 2 Score: 43.5134 bits (101), Expect = 3.676e-26
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMV+EG+  +   R +IG T+P  S PG+IRGD    V RN   G
Sbjct:   77 VVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHG 123          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.330e-25
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ERTFIA+KPDGVQR ++ E+I RFE+KGFKLVA+K +   K+  +KHY +L ++PF+  L +++SSGP  ++ W G
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEG 79          

HSP 2 Score: 48.521 bits (114), Expect = 2.330e-25
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGV-MARDRKDEINCGSNPKTG*LHKH-AEKWVYE 851
            V+AMVWEG   +  GR ++G T+P  S+PG IRGD    V RN   G       K EI+     +    +++ A+ W+YE
Sbjct:   72 VVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.054e-25
Identity = 40/69 (57.97%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++  S+E A++HY + +E+PFF GL  F++SGP
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGP 69          

HSP 2 Score: 42.3578 bits (98), Expect = 3.054e-25
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 3
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMV EG   +   RK++GAT P+ + PG IRGD A  +  N   G
Sbjct:   70 VVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHG 116          
The following BLAST results are available for this feature:
BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK2_SPIOL5.726e-2753.25Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_SYMTH8.271e-2757.14Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_BACSK9.866e-2753.85Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDK2_TOBAC1.263e-2654.55Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK3_MOUSE1.275e-2656.58Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK2_PEA2.141e-2646.74Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK3_HUMAN2.161e-2656.58Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDKC_DICDI3.676e-2661.76Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK_GINCI2.330e-2552.63Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_THET83.054e-2557.97Nucleoside diphosphate kinase OS=Thermus thermophi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT
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