EY705313

Overview
NameEY705313
Unique NameEY705313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.975e-25
Identity = 40/69 (57.97%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++  S+E A++HY + +E+PFF GL  F++SGP
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGP 69

HSP 2 Score: 42.3578 bits (98), Expect = 3.975e-25
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMV EG   +   RK++GAT P+ + PG IRGD A  +  N   G
Sbjct:   70 VVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHG 116
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.725e-25
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ME+TF+ +KPDGVQR LI EI+SRFE+KG++LV  K++  S+E A++HY + KERPFF  L +F++SGP  ++ W G
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQG 77

HSP 2 Score: 41.2022 bits (95), Expect = 8.725e-25
Identity = 21/47 (44.68%), Postives = 26/47 (55.32%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMVW+G   IT  R ++G T+P  +  G IRGD A  V  N   G
Sbjct:   70 VFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVGMNIIHG 116
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.476e-24
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERTFIAIKPDGVQRGL+ EI+ RFER+GFKLV +K++  S+  AQKHY + KERPFF GL  F++S P
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSP 69

HSP 2 Score: 35.039 bits (79), Expect = 1.476e-24
Identity = 18/47 (38.30%), Postives = 26/47 (55.32%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+A+V EG+  +   R ++G T+P  S  G IRGD    + RN   G
Sbjct:   70 VVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHG 116
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.476e-24
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ME+TF+ +KPDGVQR LI EI+ RFE KG+KL   K++  S + A+ HY + KERPFF  L +F++SGP  ++ W G+
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGE 78

HSP 2 Score: 46.9802 bits (110), Expect = 1.476e-24
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG---VMARDRKDEINCGSNPKTG*LHKHAEKWVY 848
            V AMVWEGE  I   RK++G T+P +++P  IRGD    V +N   G     + +R+  +    N       K A  W+Y
Sbjct:   70 VFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVS-YEKQANNWIY 148
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.090e-24
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGP  ++ W G+
Sbjct:    4 ERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGE 80

HSP 2 Score: 81.6481 bits (200), Expect = 6.702e-15
Identity = 49/84 (58.33%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  612 WS---VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMGVMARD-RKDEINCGSNPKTG*LHKH-AEKWVY 848
            WS   V+AMVWEGE  I YGRKLIGATDPQKSEPG IRGDLA V  RN   G    +  KDEI     P+    + H AEKW+Y
Sbjct:   67 WSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 150
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.254e-24
Identity = 39/69 (56.52%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 618
            MERT++ +KPDGVQRGLI +IIS+FE+KG+K+V +K++  S+E A++HY +   +PFFNGL +F++SGP
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGP 69

HSP 2 Score: 41.2022 bits (95), Expect = 3.254e-24
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V+AMV EG+  +T  R+++GAT+P K+ PG IR      V RN   G
Sbjct:   70 VVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHG 116
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.174e-24
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ME+TFI +KPDGVQR LI +I+SRFERKG +L   K++  +++ A+KHY + + +PFF  L EF++SGP  ++ W G+
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGE 79

HSP 2 Score: 47.7506 bits (112), Expect = 7.174e-24
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMVWEGE  I   R+LIG T+P+++ PG IRGD    V +N   G
Sbjct:   71 VFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHG 117
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.214e-23
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:  415 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYG 636
            ERTFI IKPD VQRGLI +I  RFE++G+KLVA+K++  +K   + HY +L+ +PFFN L  ++SSGP  ++ W G
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEG 81

HSP 2 Score: 46.2098 bits (108), Expect = 1.214e-23
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            VIAMVWEG   +   R+++GAT+P  S PG IRGD +    RN   G
Sbjct:   74 VIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHG 120
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.215e-23
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY + KE+PFF  L +F++SGP  ++ W G+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGE 78

HSP 2 Score: 44.2838 bits (103), Expect = 1.215e-23
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMVW+GE  +   R ++G T P ++ PG IRGD    V +N   G
Sbjct:   70 VFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHG 116
[Close]
BLAST of EY705313 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.902e-23
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:  412 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP--SLPWYGK 639
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGP  ++ W G+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGE 78

HSP 2 Score: 44.2838 bits (103), Expect = 5.902e-23
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 3 
Query:  618 VIAMVWEGEXSITYGRKLIGATDPQKSEPGNIRGDLAGVV*RNSFMG 758
            V AMVW+GE  +   R ++G T P ++ PG IRGD    V +N   G
Sbjct:   70 VFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHG 116
The following BLAST results are available for this feature:
BLAST of EY705313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_THET23.975e-2557.97Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_BREBN8.725e-2554.55Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK_GLOVI1.476e-2466.67Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_OCEIH1.476e-2451.28Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK3_SPIOL2.090e-2470.13Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_DESRM3.254e-2456.52Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_BACSU7.174e-2450.00Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_BRUMA1.214e-2352.63Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDK_BACCR1.215e-2350.00Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACHK5.902e-2348.72Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705313 ID=EY705313; Name=EY705313; organism=Citrus sinensis; type=EST; length=922bp
TGCAGACCCACGCGTCCGGTTTTCTGATTATCTTTATGTCTGTTTTGCAA
GTTGTTACTGACTGCACTTCATATTATGAAAATCTGCAAGCCAAAGTTTC
TTATCAATCTGATAAAACCTTCACTCTCTTTACTAAAGGTGGATCTAAAA
GAAGAAATTAATATTGTTGATAAAAGCTTGGATAACCATTTCTTCACAAT
TTTATCTCTTCAAGAGAACAATAATAGGAAATATTTTATGTAACTTTATG
ACATCATAGCTTTGAATATTAATTGCACGAAGTTGCGCCTTCCTTTTTCC
TCCAAAATCTCTGATCTTAATTTTTCCTTTGTGCTTTTCTTTATTATTGC
AGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGGTACTTTAAT
CACTGATCTAAATGGAACGCACTTTCATTGCCATCAAGCCAGATGGGGTG
CAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAAAGGCTT
TAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTGCACAAA
AACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTGTGCGAG
TTCCTTAGCTCTGGTCCGTCATTGCCATGGTATGGGAAGGAGAGGNNAGT
ATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGAAATCAGA
ACCTGGAAACATCAGAGGCGATCTAGCTGGTGTTGTTTGAAGAAACTCAT
TCATGGGAGTGATGGCCCGAGACCGCAAGGATGAAATAAATTGTGGGTCC
AACCCCAAGACTGGTTAATTACACAAGCATGCAGAGAAGTGGGTCTATGA
ATCCACTGATTACATTTTTCTCTACTTTATTAAAACTAAGGCCTACTGAA
TAGGGGATAAAAGCATAATGGT
back to top