EY705312

Overview
NameEY705312
Unique NameEY705312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY705312_ssr32 microsatellite EY705312_ssr32:32..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 8.418e-68
Identity = 103/165 (62.42%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W    ATFYGG+DASGTMGGACGYGNLY+ GYG NTAAL + LFN+G SCG C+ + C     PQWC  G  A+ ITATN CPPN+A PS++GGWCNPPRPHFD+A P +L++  Y+AGI+PV Y++V C ++GGIRFT+ GF +F LVLV+NVAG+G +  VSV
Sbjct:   27 WNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAG-AAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSV 190          

HSP 2 Score: 49.6766 bits (117), Expect = 8.418e-68
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNWQSNSQLVGQALSFRSTGS 773
            +T W++++RNWG NWQ NS LVGQALSF  T +
Sbjct:  194 STGWITLNRNWGANWQCNSGLVGQALSFAVTST 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.866e-67
Identity = 105/170 (61.76%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  157 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            G F  GPW+ AHATFYGG D SGT+ GACGY +   +GYGV T A+ T LF  G  CGAC+E+KC   P  C  G   +++TATN CPPN  Q +DNGGWCNPPR HFDL+MP FL++AQ +AGIVP+SYRRVPC K GGIR+TI G  YFNLV+V+NV GAGD+  +SV
Sbjct:   35 GKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSV 204          

HSP 2 Score: 41.5874 bits (96), Expect = 1.866e-67
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  681 QWLSMSRNWGQNWQSNSQLVGQALSFRSTGSDRR 782
            +W  + RNWGQ WQ++  L G++L+FR    D R
Sbjct:  211 KWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHR 244          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 2.435e-67
Identity = 100/163 (61.35%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  181 QSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            QSA ATFYGG D SGTMGGACGYGNLY+ GYG+  AAL +ALFN+G  CGAC+ + C     +WC PG  +I ITATN CPPN+A PS++GGWCNPPR HFD++ P +  +A Y+AGIVPV+Y+RVPC++ GGIRF I+G  YF LV VTNV G+G + ++S+
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSI 191          

HSP 2 Score: 51.2174 bits (121), Expect = 2.435e-67
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNWQSNSQLVGQALSF 758
            NT W++MSRNWG NWQSN+ L GQ+LSF
Sbjct:  195 NTGWMAMSRNWGANWQSNAYLAGQSLSF 222          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 5.398e-67
Identity = 105/174 (60.34%), Postives = 127/174 (72.99%), Query Frame = 1
Query:  145 AKIPGVFAGGP---WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 651
            A +    AGG    W  A ATFYGGSD SGTMGGACGYGNLY QGYGV+ AAL  ALFN+G SCG C+ + C     PQWC  G  A+ +TATN CPPN+A PSD GGWCNPPRPHFD++ P + ++  Y+AGIVPV Y+RV C ++GG+RFT+ G  YF LVL+TNVAG+G +
Sbjct:   14 AVVAACAAGGAVADWSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSV 186          

HSP 2 Score: 48.9062 bits (115), Expect = 5.398e-67
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNWQSNSQLVGQALSFRST 767
            NT W+ MSRNWG NWQS + L GQALSF  T
Sbjct:  195 NTGWIQMSRNWGANWQSLAGLAGQALSFAVT 225          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.197e-66
Identity = 103/163 (63.19%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  184 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            + HATFYGGSDASGTMGGACGYG+LYS GYG  TAAL TALFN+G SCG C+ + C    D +WC  G  +++ITATNFCPPNFA P++NGGWCNPP  HFD+A P + K+  YR GIVPV ++RV C K+GG+RF ING  YF LV + NV GAG I  VS+
Sbjct:   28 NGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKG-ASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSI 189          

HSP 2 Score: 52.373 bits (124), Expect = 1.197e-66
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGSD 776
            T WL+MSRNWG NWQSN+ L GQALSF  T +D
Sbjct:  194 TGWLAMSRNWGANWQSNAYLDGQALSFSITTTD 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.463e-66
Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W  A ATFYGGSD +GTMGGACGYGNLY+ GYG+N AAL +ALFN+G  CGAC+ + C      WC PG  +I ITATN CPPN+A+ SD GGWCNPPR HFD++ P +  +A Y+AGIVPV+++RVPC+K GGIRFTI+G  YF LV V NV G+G + +VS+
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSI 185          

HSP 2 Score: 49.6766 bits (117), Expect = 3.463e-66
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGSDRR 782
            T W++MSRNWGQNWQSN+ L  Q+LSF+    D R
Sbjct:  190 TDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAR 224          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 5.885e-66
Identity = 104/165 (63.03%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W S  ATFYGGSDASGTMGGACGYGNLY  GYG NTAAL +ALFN+G SCG C+++ C    +P+WC  G   + IT TN CPPN+A  S++GGWCNPPR HFD+A P +L++  Y+AGIVPV Y+RVPC K+GG+RFT+ GF YF LVL++NVAG+G I  V V
Sbjct:   32 WSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWV 195          

HSP 2 Score: 43.1282 bits (100), Expect = 5.885e-66
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNWQSNSQLVGQALSFRSTGS 773
            NT  + +SRNWG NWQS++ LVGQ L+F  T +
Sbjct:  199 NTDRMPLSRNWGANWQSHAGLVGQTLTFGVTST 231          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 1.001e-65
Identity = 104/169 (61.54%), Postives = 125/169 (73.96%), Query Frame = 1
Query:  166 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDP--QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            A   W  A ATFYGG+D SGTMGGACGYGNLY QGYG+  AAL TALFN+G +CG C+ + C  D   +WC P   A+ +TATN CPPN+A PSD GGWCNPPR HFD++ P + ++  YRAGIVPV YRRV C +RGG+RFT+ GF +F LVLV NVAG+G +  VSV
Sbjct:   23 AADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRG-AVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSV 190          

HSP 2 Score: 45.0542 bits (105), Expect = 1.001e-65
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRST 767
            T WL MSRNWG NWQS + L GQ LSF  T
Sbjct:  195 TGWLQMSRNWGANWQSLAGLAGQPLSFGVT 224          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.220e-65
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 1
Query:  166 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDP-QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 651
            A   W SA ATFYGGSDASGTMGG+CGYGN+YS GYG NT AL +AL+ +G SCGAC+ + C     +WC  G  ++ +TATN+CPPN+++  D GGWCNPPR HFD++ P +  +A Y +GIVPV Y R PCR+ GGIRF I G  Y+ LVLVTNVAG+G +
Sbjct:   23 AAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAV 184          

HSP 2 Score: 57.7658 bits (138), Expect = 2.220e-65
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGSD 776
            T+WLSMSRNWG+NWQSN+ L GQALSFR    D
Sbjct:  194 TEWLSMSRNWGENWQSNAYLTGQALSFRVQADD 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.043e-64
Identity = 98/162 (60.49%), Postives = 126/162 (77.78%), Query Frame = 1
Query:  184 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            S  ATFYGGSDASGTMGGACGYGNLYS GYG NTAAL +ALFN+G +CG C+++ C   + +WC  G  ++ ITATN CPP++++PS++GGWCNPPR HFD+A P + ++  YR GIVPV+++RV C ++GG+RFTING  YF LVL+TNV G G I  V +
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQI 186          

HSP 2 Score: 45.4394 bits (106), Expect = 1.043e-64
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGS 773
            T W++MSRNWG NWQ+N+ L  QA+SF  T +
Sbjct:  191 TGWVTMSRNWGANWQANNYLNNQAISFSVTST 222          

HSP 3 Score: 22.3274 bits (46), Expect = 1.043e-64
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  779 KTLTSXDVAPANXAVXQPFS 838
            KTL   DVAP+N    Q F+
Sbjct:  225 KTLVFEDVAPSNWQFGQTFT 244          
The following BLAST results are available for this feature:
BLAST of EY705312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXP25_ORYSJ8.418e-6862.42Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.866e-6761.76Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ2.435e-6761.35Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP31_ORYSJ5.398e-6760.34Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.197e-6663.19Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP33_ORYSJ3.463e-6661.59Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ5.885e-6663.03Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.001e-6561.54Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA9_ORYSJ2.220e-6558.90Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ1.043e-6460.49Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705312 ID=EY705312; Name=EY705312; organism=Citrus sinensis; type=EST; length=888bp
TCGCCCGACCCACGCGTCCGCTCCTGCGCGTTCACTCACTCACTCACTCA
ACTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGC
TCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAG
ATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTT
TTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACG
GGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCANCACG
GCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTG
CGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGATCA
CGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGC
GGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTT
CCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCA
GGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTC
CGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATAT
CGTGCGCGTGAGCGTGAAAGGGGCAACACCCAATGGCTGAGCATGAGCCG
CAACTGGGGGCAAAACTGGCAATCCAACTCTCAGCTCGTGGGCCAGGCAC
TTTCGTTTAGAAGTACGGGCAGTGACAGAAGACCCTCACCTCTTNGGACG
TGGCGCCAGCGAATTNGGCAGTCNGTCAACCTTTTTCGGAAAGATTTCCG
CGTCTAGTGAATTTTATTTTCTTTTTCACATTTTCATG
back to top