EY705312

Overview
NameEY705312
Unique NameEY705312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY705312_ssr32 microsatellite EY705312_ssr32:32..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.345e-54
Identity = 92/169 (54.44%), Postives = 112/169 (66.27%), Query Frame = 1
Query:  166 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            A   W    ATFYGG+D SGTMGGACGYGNLY Q YG+N AAL T LFN+G SCG C+ + C  G  P WC  G  AI +T TN+           GGWCN  RP+FD++ P +  +  Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G IV +SV
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSV 175          

HSP 2 Score: 44.2838 bits (103), Expect = 4.345e-54
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGS 773
            T W+ M+RNWG NWQ  + L GQALSF  T +
Sbjct:  180 TGWIQMTRNWGANWQCLAGLAGQALSFNVTST 211          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 9.613e-54
Identity = 83/163 (50.92%), Postives = 108/163 (66.26%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W+ A AT+Y  ++    +GGACGYG+L   GYG+ T  L   LF  G  CGACFEL+C  D +WC PG  +I++TATNFC PN+    D GG CNPP  HF L +  F K+A ++AG +PV YRR+ CRK G +RFT++G   F  VL+TNVAG+GDI  V +
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKI 201          

HSP 2 Score: 50.447 bits (119), Expect = 9.613e-54
Identity = 22/34 (64.71%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGSDR 779
            T WL M RNWGQNW  N+ L  QALSF  T SDR
Sbjct:  206 TGWLPMGRNWGQNWHINADLRNQALSFEVTSSDR 239          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.482e-51
Identity = 83/166 (50.00%), Postives = 114/166 (68.67%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W  AHAT+YG +D+  ++GGACGY N Y  G+G +TAAL   LF +G SCG C++++C    DP+WC  G  A+ +TATNFCP N     +N GWCN PR HFD++ P F ++A+    GIVPV YRRV C++RGG+RFT+ G   FN+V+++NV G G +  V+V
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAV 186          

HSP 2 Score: 46.595 bits (109), Expect = 1.482e-51
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  684 WLSMSRNWGQNWQSNSQLVGQALSFRSTGSDRR 782
            WL M+RNWG NWQS+  L GQ LSF+ T +D +
Sbjct:  194 WLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSK 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.574e-51
Identity = 82/170 (48.24%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  157 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            G  A   W+SA A++Y  +D    +GGACG+G+L   GYG+ T  L TALF  G +CG C+E+KC  D ++C PG  +I++TATNFC PNF  P+D GG CNPP  HF L +  F K+A ++AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +
Sbjct:   26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKI 193          

HSP 2 Score: 45.8246 bits (107), Expect = 5.574e-51
Identity = 20/31 (64.52%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  684 WLSMSRNWGQNWQSNSQLVGQALSFRSTGSD 776
            WLSM RNWGQ W  NS   GQ LSF  T SD
Sbjct:  200 WLSMGRNWGQIWHINSDFRGQPLSFELTSSD 230          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.046e-49
Identity = 93/165 (56.36%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W    ATFYG     G   GGACGY  N     Y   TAAL T LF +G  CG C+EL+C   P WCNPG+P+++IT TN CPPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  +SV
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSV 215          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 5.043e-49
Identity = 85/163 (52.15%), Postives = 106/163 (65.03%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 663
            W  A A +YG     GT + GACGYG+L   GYG+ TAAL TALFN+G SCGAC+E+ C  +PQ C  G+  I ITAT+ CPP  A       WC  P  HFDL++PMF+K+AQ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ VS
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVS 198          

HSP 2 Score: 45.4394 bits (106), Expect = 5.043e-49
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGSD 776
            T W+ MSR WGQNW +N  L GQ++S R T SD
Sbjct:  204 TAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSD 236          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.009e-46
Identity = 74/165 (44.85%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W+ A AT     D S ++  GGACGYG+L    +   +A L   LFN G SCGAC E++C    +WC  G+P++++TAT+FCPPN    SD GGWCN P+ H +L+   F  +A+ RA ++P+ YRRV C +RGG+RF+++G  +F  VL++NV   G++V V V
Sbjct:   28 WKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKV 192          

HSP 2 Score: 47.3654 bits (111), Expect = 1.009e-46
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRST 767
            T W+ M+RNWGQNW S+  L+GQ+LSF  T
Sbjct:  197 TAWIPMARNWGQNWHSSLDLIGQSLSFEVT 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.187e-44
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  232 GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            GGACGYG+L    YG  TA +  ALF  G +CG C+E++C     WC  G+P +++TAT+FC PN     D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V V
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKV 196          

HSP 2 Score: 47.3654 bits (111), Expect = 1.187e-44
Identity = 20/35 (57.14%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  678 TQWLSMSRNWGQNWQSNSQLVGQALSFRSTGSDRR 782
            T W+ M RNWGQNWQ ++ L GQ LSF  TG   R
Sbjct:  201 TGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGR 235          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.705e-43
Identity = 89/179 (49.72%), Postives = 114/179 (63.69%), Query Frame = 1
Query:  145 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            AK+P V  G    GPW   HATFYGG DASGT  GGACGY +  + GYG  TAA+  ALF+NG  CGAC+ELK  GD          +++TATN  PP       NG        HFDL MP FL +A+ + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD+V+++V
Sbjct:   67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTV 226          

HSP 2 Score: 38.891 bits (89), Expect = 3.705e-43
Identity = 15/42 (35.71%), Postives = 26/42 (61.90%), Query Frame = 3
Query:  681 QWLSMSRNWGQNWQSNSQLVGQALSFRSTGSDRRPSPLXTWR 806
            +W  + R+WGQ W++ + L G++L+FR    D R +   +WR
Sbjct:  233 KWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKA--TSWR 272          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.997e-19
Identity = 58/176 (32.95%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFR--YFNLVLVTNVAGAGDIVRVSV 666
            G  W S  AT+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C+++KC G+ + C+ G P + +  T+ CP         GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V +
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHI 205          

HSP 2 Score: 25.7942 bits (55), Expect = 1.997e-19
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  684 WLSMSRNWGQNWQSNSQLVGQALS 755
            W +M ++WG  W+ NS   G+ LS
Sbjct:  214 WKAMQQSWGATWRLNSN-TGKPLS 236          
The following BLAST results are available for this feature:
BLAST of EY705312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXP20_ORYSJ4.345e-5454.44Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH9.613e-5450.92Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP12_ARATH1.482e-5150.00Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP10_ORYSJ5.574e-5148.24Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ3.046e-4956.36Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH5.043e-4952.15Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH1.009e-4644.85Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ1.187e-4448.28Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ3.705e-4349.72Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ1.997e-1932.95Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705312 ID=EY705312; Name=EY705312; organism=Citrus sinensis; type=EST; length=888bp
TCGCCCGACCCACGCGTCCGCTCCTGCGCGTTCACTCACTCACTCACTCA
ACTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGC
TCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAG
ATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTT
TTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACG
GGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCANCACG
GCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTG
CGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGATCA
CGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGC
GGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTT
CCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCA
GGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTC
CGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATAT
CGTGCGCGTGAGCGTGAAAGGGGCAACACCCAATGGCTGAGCATGAGCCG
CAACTGGGGGCAAAACTGGCAATCCAACTCTCAGCTCGTGGGCCAGGCAC
TTTCGTTTAGAAGTACGGGCAGTGACAGAAGACCCTCACCTCTTNGGACG
TGGCGCCAGCGAATTNGGCAGTCNGTCAACCTTTTTCGGAAAGATTTCCG
CGTCTAGTGAATTTTATTTTCTTTTTCACATTTTCATG
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