EY705312

Overview
NameEY705312
Unique NameEY705312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY705312_ssr32 microsatellite EY705312_ssr32:32..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.195e-18
Identity = 59/174 (33.91%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W    AT+YG ++ SGT GGACGY G++    +    AA   +++ +G  CG+C+++KC G+P  C+ G P + +  T+ CP         GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V +
Sbjct:   38 WSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDL 199          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.125e-16
Identity = 57/169 (33.73%), Postives = 81/169 (47.93%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 651
            W  A AT+YG  +  G+ GGACGYG L   +       A+   LF NG  CGAC++++C  D   C+    A+ +  T+ CP            C+    HFDL+  +F +LA           G++PV YRR  C+ RG  I F +N     ++  +LV    G GDI
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDI 190          

HSP 2 Score: 24.6386 bits (52), Expect = 1.125e-16
Identity = 7/13 (53.85%), Postives = 8/13 (61.54%), Query Frame = 3
Query:  681 QWLSMSRNWGQNW 719
            +WL M   WG NW
Sbjct:  202 EWLEMKHVWGANW 214          

HSP 3 Score: 22.7126 bits (47), Expect = 1.125e-16
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  779 KTLTSXDVAPANXAVXQPFSER 844
            KTL++ DV P N A    +S R
Sbjct:  236 KTLSATDVVPRNWAPKATYSSR 257          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDIVRVSV 666
            W +  AT+YG ++ +G+ GGACGY G ++   +    AA   +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG++ T      +   YF  VLV    G GD+  V +
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDLSGVEL 198          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 651
            W +  AT+YG ++ +G+ GGACGY     Q  +    AA   +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG+  T      +   YF  VLV    G GD+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDL 193          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.219e-14
Identity = 57/169 (33.73%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRA-------GIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 651
            W+ A AT+YG ++  G+ GGACGYG+L           ++   LF +G  CGAC+++KC  D   C+    A+ +  T+ CP         GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDI 204          

HSP 2 Score: 22.7126 bits (47), Expect = 1.219e-14
Identity = 6/15 (40.00%), Postives = 8/15 (53.33%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNW 719
            + +WL M   WG  W
Sbjct:  214 SVEWLDMKHVWGATW 228          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSVXXXXXXXXXXXXXXXXXXXXXLSSWARHFRLEVRAVTEDP 786
            GG W +A AT+YG  + +G    GGACG+ N+    +   T+     LF +G  CG+C++++C G P  C+     ++IT  N+ P +                HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+V+V +                       SW   +RL+     + P
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWRLDTNHPLQGP 291          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.586e-14
Identity = 58/169 (34.32%), Postives = 78/169 (46.15%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 651
            W  A AT+YG +D  G+ GGACGYG L           A+   LF  G  CGAC++++C  D   C+    A+ +  T+ CP         GG C   R HFDL+   F +LA           G + V YRR  C+  G  I F +N     ++  +LV    G GDI
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDI 201          

HSP 2 Score: 21.557 bits (44), Expect = 1.586e-14
Identity = 6/15 (40.00%), Postives = 7/15 (46.67%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNW 719
            + QW  M   WG  W
Sbjct:  211 SAQWQDMKHIWGATW 225          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 64/184 (34.78%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  154 PGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI----NGFRYFNLVLVTNVAGAGDIVRVSV 666
            P V     W +A AT+YG  +  G+ GGACGY     Q  +    AA   +L+  G  CGAC+E+KC  +   C+ G PA ++  T+ CP         GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+  V +
Sbjct:   56 PSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CS-GQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDLNAVDL 225          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.272e-14
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 651
            W  A AT+YG ++  G+ GGACGYG+L   + +     A+   LF  G  CGAC++++C  D   C+    A+ I AT+  P        +G        HFDL+   F  +A           G++ + YRR  C+ RG  I F +N     Y+  +L+    G GDI
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRC-LDKTICS--KRAVTIIATDQSP--------SGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDI 197          

HSP 2 Score: 25.409 bits (54), Expect = 3.272e-14
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  681 QWLSMSRNWGQNW 719
            +W+SM   WG NW
Sbjct:  209 EWISMKHIWGANW 221          

HSP 3 Score: 20.4014 bits (41), Expect = 3.272e-14
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  779 KTLTSXDVAPANXAVXQPFSER 844
            KTL++ DV P+N      ++ R
Sbjct:  243 KTLSATDVIPSNWVPKATYTSR 264          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 56/178 (31.46%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  172 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRVSV 666
            GPW  A AT+YG  + +G    GGACG+ +     +   T+     LF +G  CG+C++++C  D Q C+  +  ++IT  N+ P     P            HFDL+   F +LA+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+V+V +
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDL 214          
The following BLAST results are available for this feature:
BLAST of EY705312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXB14_ORYSJ6.195e-1833.91Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXPB3_ARATH1.125e-1633.73Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB15_ORYSJ9.890e-1634.09Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ1.093e-1434.50Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ1.219e-1433.73Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ1.428e-1426.61Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB16_ORYSJ1.586e-1434.32Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ3.181e-1434.78Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB1_ARATH3.272e-1431.95Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXPB4_ORYSJ1.023e-1231.46Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705312 ID=EY705312; Name=EY705312; organism=Citrus sinensis; type=EST; length=888bp
TCGCCCGACCCACGCGTCCGCTCCTGCGCGTTCACTCACTCACTCACTCA
ACTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGC
TCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAG
ATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTT
TTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACG
GGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCANCACG
GCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTG
CGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGATCA
CGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGC
GGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTT
CCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCA
GGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTC
CGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATAT
CGTGCGCGTGAGCGTGAAAGGGGCAACACCCAATGGCTGAGCATGAGCCG
CAACTGGGGGCAAAACTGGCAATCCAACTCTCAGCTCGTGGGCCAGGCAC
TTTCGTTTAGAAGTACGGGCAGTGACAGAAGACCCTCACCTCTTNGGACG
TGGCGCCAGCGAATTNGGCAGTCNGTCAACCTTTTTCGGAAAGATTTCCG
CGTCTAGTGAATTTTATTTTCTTTTTCACATTTTCATG
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