EY705312

Overview
NameEY705312
Unique NameEY705312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY705312_ssr32 microsatellite EY705312_ssr32:32..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 1.760e-12
Identity = 55/174 (31.61%), Postives = 82/174 (47.13%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRG-GIRFTINGFRYFN--LVLVTNVAGAGDIVRVSV 666
            W  A +T+YG     G+ GGACGYGN  +Q  +    +A   +LF +G  CGAC+++KC      C+  NP + +  T+ CP            C     HFDL+   F  +A      Q R  G + + Y++V C   G  + F ++     N   VLV  V G G+I R+ +
Sbjct:   47 WSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSK-NP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIEL 206          

HSP 2 Score: 26.5646 bits (57), Expect = 1.760e-12
Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  681 QWLSMSRNWGQNWQSN-SQLVGQALSFRST 767
            +WLSMS++WG  W+ + S  +   LS R T
Sbjct:  214 KWLSMSQSWGAVWKLDVSSPLRAPLSLRVT 243          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.760e-12
Identity = 59/180 (32.78%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  172 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G W +A AT+YG  + +G    GGACG  N+    Y   TA     +F +G  CG+C+E++C   P+ C+ GNP  + IT  N+                P  P HFDL+   F  LA+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + +
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEI 203          

HSP 2 Score: 20.4014 bits (41), Expect = 1.760e-12
Identity = 5/19 (26.32%), Postives = 11/19 (57.89%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNWQSNS 731
            + +W  M  +WG  W+ ++
Sbjct:  208 SAEWKPMKLSWGAIWRMDT 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.760e-12
Identity = 59/180 (32.78%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  172 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G W +A AT+YG  + +G    GGACG  N+    Y   TA     +F +G  CG+C+E++C   P+ C+ GNP  + IT  N+                P  P HFDL+   F  LA+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + +
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 203          

HSP 2 Score: 20.4014 bits (41), Expect = 1.760e-12
Identity = 5/19 (26.32%), Postives = 11/19 (57.89%), Query Frame = 3
Query:  675 NTQWLSMSRNWGQNWQSNS 731
            + +W  M  +WG  W+ ++
Sbjct:  208 SAEWKPMKLSWGAIWRMDT 226          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 52/178 (29.21%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSV 666
            G  W  A AT+YG    +G    GGACG+ N+    +   T+     +F +G  CG+C++++C  DP  C+     ++IT  N+ P                R HFDL+   F  +A+         +GI+ + +RRVPC   G  I F +       +  VLV      GD+V+V +
Sbjct:   41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDL 203          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 58/173 (33.53%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  184 SAHATFYGGSDASGTMGGACGYGNLYSQG--YGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDL---AMPMFLKLAQ----YRAGIVPVSYRRVPCRKRGG---IRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            +A  T+YG    +G+ GGACGYG+  +    Y + +A    +LFNNG  CG C+++ C G P  C+ G+P I +T T+ CP         GG C     H DL   AM    K  Q      AG++ V+Y+R  C  RG     R       Y+   +V    G GD+  V +
Sbjct:   35 TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPA-CS-GSP-ITVTITDECP---------GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEI 194          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 47/148 (31.76%), Postives = 69/148 (46.62%), Query Frame = 1
Query:  157 GVFAGGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG 573
            GV     W  A AT+YG  + +G    GGACG+ N     +   T+     LF +G  CGAC++++C  +P  C+     ++IT  N+ P                R HFDL+   F  +A+         AGI+ + +RRVPC  RG
Sbjct:   24 GVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRG 156          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 60/179 (33.52%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN---GFRYFNLVLVTNVAGAGDIVRVSV 666
            G  W  A AT+YG    +G    GG CGY ++    +    A     +F +GL CG+CFE+KC   P  C+ G P ++ IT  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +    G  Y  L LV  V G GDIV V V
Sbjct:   47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECS-GKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDV 208          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 55/177 (31.07%), Postives = 78/177 (44.07%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN--LVLVTNVAGAGDIVRVSV 666
            G  W  A AT+YG    +G    GG CGY ++    +    A     +F +GL CG+CFE+KC   P  C+     + IT  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +      N   +LV  V G GDIV V +
Sbjct:   46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDI 207          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 1
Query:  175 PWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            PW  A AT+YG    SG+   GGACG  N+    Y    +     +F +G  CG+C+E+KC   P  C+     + IT  N+ P +                HFD +   F  +A         +AGI+ + +RRV C+  GG + T +  +  N     VLV  VA  GD++++ +
Sbjct:   42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDL 203          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 50/176 (28.41%), Postives = 82/176 (46.59%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            W+ A AT+YG    +G    GGACG+ N     +   T+     +F +G  CG+C++++C   P  C+     ++IT  N+ P +              + HFDL+   F  +A+         AGI+ + ++RVPC    G++ T +     N     VLV    G GD+V+V +
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPC-NFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDL 201          
The following BLAST results are available for this feature:
BLAST of EY705312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXPB2_ARATH1.760e-1231.61Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB9_MAIZE1.760e-1232.78Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB1_MAIZE1.760e-1232.78Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB6_ORYSJ2.280e-1229.21Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB4_ARATH2.280e-1233.53Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
EXPB2_ORYSJ2.280e-1231.76Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_MAIZE2.978e-1233.52Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXB11_MAIZE5.079e-1231.07Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB9_ORYSJ8.664e-1229.94Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ORYSJ8.664e-1228.41Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705312 ID=EY705312; Name=EY705312; organism=Citrus sinensis; type=EST; length=888bp
TCGCCCGACCCACGCGTCCGCTCCTGCGCGTTCACTCACTCACTCACTCA
ACTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGC
TCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAG
ATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTT
TTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACG
GGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCANCACG
GCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTG
CGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGATCA
CGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGC
GGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTT
CCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCA
GGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTC
CGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATAT
CGTGCGCGTGAGCGTGAAAGGGGCAACACCCAATGGCTGAGCATGAGCCG
CAACTGGGGGCAAAACTGGCAATCCAACTCTCAGCTCGTGGGCCAGGCAC
TTTCGTTTAGAAGTACGGGCAGTGACAGAAGACCCTCACCTCTTNGGACG
TGGCGCCAGCGAATTNGGCAGTCNGTCAACCTTTTTCGGAAAGATTTCCG
CGTCTAGTGAATTTTATTTTCTTTTTCACATTTTCATG
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