EY705312

Overview
NameEY705312
Unique NameEY705312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY705312_ssr32 microsatellite EY705312_ssr32:32..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.401e-11
Identity = 56/180 (31.11%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G  W  A +T+YG    +G    GGACGY N+    +   T    T +F +G  CG+CFE+KC   P+ C+    A+ +T T+          DN     P  P HFDL+   F  +A+         AG + + +RRV C+     + T +  +  N     +LV  V G GD+V V +
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCS--GEAVTVTITD----------DNE---EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDI 201          

HSP 2 Score: 20.7866 bits (42), Expect = 2.401e-11
Identity = 4/14 (28.57%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  681 QWLSMSRNWGQNWQ 722
            +W+ +  +WG  W+
Sbjct:  208 KWIELKESWGAVWR 221          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 55/180 (30.56%), Postives = 82/180 (45.56%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGY-GVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G  W  A AT+YG    +G    GGACGY ++    + G+N+      +F +G  CG+CFE+KC   P+ C+     I +T  N  P                  HFDL+   F  +A+        +AGI+   +RRV C+     + T +  +  N     +LV  VAG GD+V V +
Sbjct:   38 GDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMNDEP--------------IAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEI 201          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 56/180 (31.11%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGY-GVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G  W  A  T+YG    +G    GGACGY ++    + G+N+      +F +G  CG+CFE+KC   P+ C+     I IT  N  P                  HFDL+   F  +A+        +AGI+ + +RRV C+  G  + T +  +  N     VLV  V G GD+V+V +
Sbjct:   38 GKQWLEARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCG-NDPIFKDGKGCGSCFEVKC-SKPEACSDKPVIIHITDMNTEP--------------IAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVEL 201          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 53/180 (29.44%), Postives = 81/180 (45.00%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSD---ASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN----GFRYFNLVLVTNVAGAGDIVRVSV 666
            G  W  A ATFYG +    A    GGACGY ++    +   TA     +F +GL C AC+E+KC  +P  C+     + IT  N+               +    HFDL+   F  +A+        +AG + + +RRV C+   G + T +       ++  +LV   AG G+IV V +
Sbjct:   15 GSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITDKNY--------------EHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDI 179          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 50/175 (28.57%), Postives = 78/175 (44.57%), Query Frame = 1
Query:  178 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 666
            W +A AT+YG  + +G    GGACG+  +    +   T+     L+  G  CG+C+ ++C  +P  C+     + IT  N+ P +              + HFDL+   F +LA+        RAGI+ V + RVPC   G   G          +  VLV    G GD+ +V +
Sbjct:   48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDL 207          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 47/165 (28.48%), Postives = 75/165 (45.45%), Query Frame = 1
Query:  184 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRG-GIRFTINGFRY---FNLVLVTNVAGAGDIVRVSV 666
            ++ AT+YG  D      G CGYG           + +   L+NNG  CGAC++++C   P     G   + + AT+      +   D   +   P+ +  +A P   +   Y  G+V V Y+R+PCR  G  + + I+   Y   +  +LV  V G  DI+ V V
Sbjct:   29 NSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEG---VYVVATD------SGEGDGTDFILSPKAYGRMARP-GTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEV 183          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.812e-11
Identity = 55/180 (30.56%), Postives = 80/180 (44.44%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G  W  A +T+YG    +G    GGACGY ++    +   T    T +F +G  CG+CFELKC   P+ C+     + IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V +
Sbjct:   44 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKC-SKPESCSGEPITVHITDDNE---------------EPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAVDI 207          

HSP 2 Score: 20.7866 bits (42), Expect = 6.812e-11
Identity = 4/14 (28.57%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  681 QWLSMSRNWGQNWQ 722
            +W+ +  +WG  W+
Sbjct:  214 KWIELKESWGAIWR 227          
BLAST of EY705312 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.818e-11
Identity = 56/181 (30.94%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  169 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALXTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSV 666
            G  W  A +T+YG    +G    GGACGY ++    +   T    T +F +G  CG+CFE+KC   P+ C+ G P ++ IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V +
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC-TKPEACS-GEPVVVHITDDNE---------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDI 201          

HSP 2 Score: 20.7866 bits (42), Expect = 6.818e-11
Identity = 4/14 (28.57%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  681 QWLSMSRNWGQNWQ 722
            +W+ +  +WG  W+
Sbjct:  208 KWIELKESWGAIWR 221          
The following BLAST results are available for this feature:
BLAST of EY705312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
MPAL1_LOLPR2.401e-1131.11Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
EXPB1_ORYSJ2.521e-1130.56Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_ORYSJ4.300e-1131.11Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
MPAC1_CYNDA5.616e-1129.44Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXPB8_ORYSJ5.616e-1128.57Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLB1_ARATH5.616e-1128.48Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
MPAP1_PHAAQ6.812e-1130.56Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAP1_PHLPR6.818e-1130.94Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705312 ID=EY705312; Name=EY705312; organism=Citrus sinensis; type=EST; length=888bp
TCGCCCGACCCACGCGTCCGCTCCTGCGCGTTCACTCACTCACTCACTCA
ACTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGC
TCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAG
ATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTT
TTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACG
GGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCANCACG
GCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTG
CGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGATCA
CGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGC
GGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTT
CCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCA
GGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTC
CGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATAT
CGTGCGCGTGAGCGTGAAAGGGGCAACACCCAATGGCTGAGCATGAGCCG
CAACTGGGGGCAAAACTGGCAATCCAACTCTCAGCTCGTGGGCCAGGCAC
TTTCGTTTAGAAGTACGGGCAGTGACAGAAGACCCTCACCTCTTNGGACG
TGGCGCCAGCGAATTNGGCAGTCNGTCAACCTTTTTCGGAAAGATTTCCG
CGTCTAGTGAATTTTATTTTCTTTTTCACATTTTCATG
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