EY705311

Overview
NameEY705311
Unique NameEY705311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.487e-65
Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 6.487e-65
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  165 RQVQCISFIAYKPEG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.875e-64
Identity = 111/151 (73.51%), Postives = 133/151 (88.08%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQ 549
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYREH+ SPGYYDGRYWTMWKLPM+GCTD TQVL EV E +
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 1.875e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  166 RQVQCISFIAYKPEG 180          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.875e-64
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 1.875e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  165 RQVQCISFIAYKPEG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 2.445e-64
Identity = 113/152 (74.34%), Postives = 129/152 (84.87%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K+
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKE 148          

HSP 2 Score: 30.4166 bits (67), Expect = 2.445e-64
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  596 RQVQCISFIAAKPP 637
            RQVQCISFIA KPP
Sbjct:  163 RQVQCISFIAYKPP 176          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.189e-64
Identity = 111/151 (73.51%), Postives = 133/151 (88.08%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT  RA+ AQASMV PFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 3.189e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  165 RQVQCISFIAYKPEG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.189e-64
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 3.189e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  165 RQVQCISFIAYKPEG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.189e-64
Identity = 113/150 (75.33%), Postives = 125/150 (83.33%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQ 549
            MASSMISS  V T NRA    A MVAPFTGLKS + FP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146          

HSP 2 Score: 32.7278 bits (73), Expect = 3.189e-64
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KPPG
Sbjct:  163 RQVQCISFIAYKPPG 177          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 4.157e-64
Identity = 111/152 (73.03%), Postives = 134/152 (88.16%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA  AT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E+G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSIVSSAAAAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 150          

HSP 2 Score: 29.6462 bits (65), Expect = 4.157e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  166 RQVQCISFIAYKPEG 180          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.158e-64
Identity = 111/151 (73.51%), Postives = 129/151 (85.43%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT+  A  AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K
Sbjct:    1 MASSVMSSAAVATSTNA--AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKK 149          

HSP 2 Score: 32.7278 bits (73), Expect = 4.158e-64
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KPPG
Sbjct:  165 RQVQCISFIAYKPPG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.421e-64
Identity = 112/152 (73.68%), Postives = 128/152 (84.21%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            MASSM+SSA V T    S  QA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K+
Sbjct:    1 MASSMLSSAAVVT----SQLQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKE 148          

HSP 2 Score: 30.8018 bits (68), Expect = 5.421e-64
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPP 637
            + RQVQCISFIA KPP
Sbjct:  161 NNRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY705311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS8_NICPL6.487e-6574.17Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS0_SOLTU1.875e-6473.51Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS3B_SOLLC1.875e-6474.17Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3B_ARATH2.445e-6474.34Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBSB_SOLTU3.189e-6473.51Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS3A_SOLLC3.189e-6474.17Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_SOYBN3.189e-6475.33Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLLC4.157e-6473.03Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_PETHY4.158e-6473.51Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_RAPSA5.421e-6473.68Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705311 ID=EY705311; Name=EY705311; organism=Citrus sinensis; type=EST; length=944bp
TTTCCGACCCACGCGTCCGATTATATAAACCTACCGCCCACTGAGCATCC
TCCTATTAAGTAAAATAACTTGCAAAGCTAGAAGAAGGATCAAGTACCAA
TGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCC
AGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTC
TTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTG
CAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGC
TTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCT
TGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGATACCCACATTCATTCGTCCGAATTATCGGATTTGACACAAGCGTCA
AGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTC
CCAATTAAATTTGTGNTACCACCCATGCAATATTGTTGATTATTATTATG
TGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTA
ATTTGTACTTANGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTC
CCGACNNTTGCTNCTTTTTTTTTTTTTTAATATATTTAATAATNGAATCC
TTTGNTTCAGNTNCATAATCTGGGTCTCGGGATGTCAGTTAATGAGTGAG
AATACTGGAATTAAAGAGTAGTTTATGATTCTTGCAAAAAAAAA
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