EY705311

Overview
NameEY705311
Unique NameEY705311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 136          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 126          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 135          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.228e-20
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDM 136          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.453e-20
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  409 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K+
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKE 49          

HSP 2 Score: 30.8018 bits (68), Expect = 7.453e-20
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPP 637
            + RQVQCISFIA KPP
Sbjct:   62 NNRQVQCISFIAYKPP 77          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.078e-15
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  322 SYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537
            SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   ++    G     Y D RYWTMWKLPM+GCTD +QVL E+
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 79          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.366e-14
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF  +                  YWTMWKLP++  T   +VL EV E + +
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSD------------ATTCYWTMWKLPLFHATSTQEVLGEVRECRTE 79          

HSP 2 Score: 27.7202 bits (60), Expect = 6.366e-14
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  555 YPHSFVRIIGFDTSVKCSASVSLLPSHQASRF 650
            YP+ ++R++GFD   +C  SVS +  H+ +R+
Sbjct:   80 YPNCYIRVVGFDNIKQCQ-SVSFI-VHKPNRY 109          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.238e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            K++ETLSYLPPLSD+ + +++ Y++  G+IP +EF  EK      HH          WT+WKLP++  + A +VL EV E + +
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--EKDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSE 79          

HSP 2 Score: 21.9422 bits (45), Expect = 3.238e-12
Identity = 6/17 (35.29%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  555 YPHSFVRIIGFDTSVKC 605
            Y   ++R++GFD   +C
Sbjct:   80 YSDCYIRVVGFDNIKQC 96          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK---DTHIHSSELSDLTQASSAVHQFH 621
            ++FET SYLPPLSD  +  +I Y+I  G+ P +EF           H +P  +   YWTMWKLP++ C    QVL EV E +    D +I  +   ++ Q  +     H
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF---------NEHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVH 106          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.206e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            +++ETLSYLPPL+D+ + K++ +L+  G+IP +EFE +      E H         +WTMWKLP +G   A +VL EV E + +
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSE 79          

HSP 2 Score: 23.483 bits (49), Expect = 4.206e-12
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  558 PHSFVRIIGFDTSVKC 605
            P+ ++R+IGFD   +C
Sbjct:   81 PNCYIRVIGFDNIKQC 96          
The following BLAST results are available for this feature:
BLAST of EY705311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS5_ACEAT3.238e-2048.39Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_ACEAT3.238e-2048.39Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT3.238e-2048.39Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS7_ACECL4.228e-2048.39Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS_SINAL7.453e-2073.47Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1_ACECL1.078e-1547.44Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_PROHO6.366e-1439.29Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP23.238e-1240.48Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP63.245e-1235.78Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNY34.206e-1240.48Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705311 ID=EY705311; Name=EY705311; organism=Citrus sinensis; type=EST; length=944bp
TTTCCGACCCACGCGTCCGATTATATAAACCTACCGCCCACTGAGCATCC
TCCTATTAAGTAAAATAACTTGCAAAGCTAGAAGAAGGATCAAGTACCAA
TGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCC
AGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTC
TTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTG
CAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGC
TTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCT
TGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGATACCCACATTCATTCGTCCGAATTATCGGATTTGACACAAGCGTCA
AGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTC
CCAATTAAATTTGTGNTACCACCCATGCAATATTGTTGATTATTATTATG
TGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTA
ATTTGTACTTANGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTC
CCGACNNTTGCTNCTTTTTTTTTTTTTTAATATATTTAATAATNGAATCC
TTTGNTTCAGNTNCATAATCTGGGTCTCGGGATGTCAGTTAATGAGTGAG
AATACTGGAATTAAAGAGTAGTTTATGATTCTTGCAAAAAAAAA
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