EY705311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 136
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 126
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.238e-20 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 135
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.228e-20 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 277 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537 M VW P K FET SYLPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDM 136
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.453e-20 Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 409 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555 ELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K+ Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKE 49 HSP 2 Score: 30.8018 bits (68), Expect = 7.453e-20 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 590 HKRQVQCISFIAAKPP 637 + RQVQCISFIA KPP Sbjct: 62 NNRQVQCISFIAYKPP 77
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.078e-15 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 322 SYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEV 537 SYLPPL+DE + K+++Y++ + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD +QVL E+ Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEI 79
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.366e-14 Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1 Query: 304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555 +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF + YWTMWKLP++ T +VL EV E + + Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSD------------ATTCYWTMWKLPLFHATSTQEVLGEVRECRTE 79 HSP 2 Score: 27.7202 bits (60), Expect = 6.366e-14 Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3 Query: 555 YPHSFVRIIGFDTSVKCSASVSLLPSHQASRF 650 YP+ ++R++GFD +C SVS + H+ +R+ Sbjct: 80 YPNCYIRVVGFDNIKQCQ-SVSFI-VHKPNRY 109
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.238e-12 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555 K++ETLSYLPPLSD+ + +++ Y++ G+IP +EF EK HH WT+WKLP++ + A +VL EV E + + Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--EKDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSE 79 HSP 2 Score: 21.9422 bits (45), Expect = 3.238e-12 Identity = 6/17 (35.29%), Postives = 11/17 (64.71%), Query Frame = 3 Query: 555 YPHSFVRIIGFDTSVKC 605 Y ++R++GFD +C Sbjct: 80 YSDCYIRVVGFDNIKQC 96
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12 Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1 Query: 304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK---DTHIHSSELSDLTQASSAVHQFH 621 ++FET SYLPPLSD + +I Y+I G+ P +EF H +P + YWTMWKLP++ C QVL EV E + D +I + ++ Q + H Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF---------NEHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVH 106
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.206e-12 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 304 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555 +++ETLSYLPPL+D+ + K++ +L+ G+IP +EFE + E H +WTMWKLP +G A +VL EV E + + Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSE 79 HSP 2 Score: 23.483 bits (49), Expect = 4.206e-12 Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 558 PHSFVRIIGFDTSVKC 605 P+ ++R+IGFD +C Sbjct: 81 PNCYIRVIGFDNIKQC 96 The following BLAST results are available for this feature:
BLAST of EY705311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >EY705311 ID=EY705311; Name=EY705311; organism=Citrus sinensis; type=EST; length=944bpback to top |