EY705311

Overview
NameEY705311
Unique NameEY705311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.476e-63
Identity = 109/151 (72.19%), Postives = 132/151 (87.42%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 3.476e-63
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  165 RQVQCISFIAYKPEG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 4.531e-63
Identity = 110/151 (72.85%), Postives = 129/151 (85.43%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSM+SSA VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 149          

HSP 2 Score: 28.4906 bits (62), Expect = 4.531e-63
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPS 632
            YP +F+RIIGFD    V+C + ++  P+
Sbjct:  151 YPEAFIRIIGFDNVRQVQCISFIAYKPA 178          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 5.908e-63
Identity = 110/152 (72.37%), Postives = 126/152 (82.89%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            MASSM SS  V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +K+
Sbjct:    1 MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKE 148          

HSP 2 Score: 30.4166 bits (67), Expect = 5.908e-63
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  596 RQVQCISFIAAKPP 637
            RQVQCISFIA KPP
Sbjct:  163 RQVQCISFIAYKPP 176          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 7.703e-63
Identity = 110/152 (72.37%), Postives = 128/152 (84.21%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGRV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + +
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTE 148          

HSP 2 Score: 30.8018 bits (68), Expect = 7.703e-63
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPP 637
            + RQVQCISFIA KPP
Sbjct:  161 NNRQVQCISFIAYKPP 176          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 7.706e-63
Identity = 113/158 (71.52%), Postives = 133/158 (84.18%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK---DTHI 564
            MASS++SSA VAT  R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K   D HI
Sbjct:    1 MASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHI 156          

HSP 2 Score: 27.7202 bits (60), Expect = 7.706e-63
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  596 RQVQCISFIAAKP 634
            RQVQCISFIA KP
Sbjct:  165 RQVQCISFIAYKP 177          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.004e-62
Identity = 110/151 (72.85%), Postives = 129/151 (85.43%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++S+ATVAT   A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKK 149          

HSP 2 Score: 27.7202 bits (60), Expect = 1.004e-62
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  596 RQVQCISFIAAKP 634
            RQVQCISFIA KP
Sbjct:  165 RQVQCISFIAYKP 177          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.004e-62
Identity = 110/152 (72.37%), Postives = 127/152 (83.55%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            MASSM+SSA V T    S AQA+MVAPFTGLKSSSAFP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + +
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTE 148          

HSP 2 Score: 30.8018 bits (68), Expect = 1.004e-62
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPP 637
            + RQVQCISFIA KPP
Sbjct:  161 NNRQVQCISFIAYKPP 176          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.310e-62
Identity = 112/150 (74.67%), Postives = 124/150 (82.67%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQ 549
            MASSMISS  V T NRA    A MVAPFTGLKS +  P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAK 146          

HSP 2 Score: 30.4166 bits (67), Expect = 1.310e-62
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  596 RQVQCISFIAAKPP 637
            RQVQCISFIA KPP
Sbjct:  163 RQVQCISFIAYKPP 176          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.226e-62
Identity = 106/153 (69.28%), Postives = 133/153 (86.93%), Query Frame = 1
Query:  100 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSM+S+A VAT  A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 153          

HSP 2 Score: 28.4906 bits (62), Expect = 2.226e-62
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPS 632
            YP +F+RIIGFD    V+C + ++  P+
Sbjct:  155 YPEAFIRIIGFDNVRQVQCVSFIAYKPA 182          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.228e-62
Identity = 111/150 (74.00%), Postives = 124/150 (82.67%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQ 549
            MASSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAK 146          

HSP 2 Score: 30.4166 bits (67), Expect = 2.228e-62
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  596 RQVQCISFIAAKPP 637
            RQVQCISFIA KPP
Sbjct:  163 RQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY705311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS1_NICSY3.476e-6372.19Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR4.531e-6372.85Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2B_ARATH5.908e-6372.37Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS2_BRANA7.703e-6372.37Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS_STELP7.706e-6371.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN1.004e-6272.85Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_BRANA1.004e-6272.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_SOYBN1.310e-6274.67Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_MESCR2.226e-6269.28Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_GLYTO2.228e-6274.00Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705311 ID=EY705311; Name=EY705311; organism=Citrus sinensis; type=EST; length=944bp
TTTCCGACCCACGCGTCCGATTATATAAACCTACCGCCCACTGAGCATCC
TCCTATTAAGTAAAATAACTTGCAAAGCTAGAAGAAGGATCAAGTACCAA
TGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCC
AGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTC
TTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTG
CAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGC
TTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCT
TGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGATACCCACATTCATTCGTCCGAATTATCGGATTTGACACAAGCGTCA
AGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTC
CCAATTAAATTTGTGNTACCACCCATGCAATATTGTTGATTATTATTATG
TGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTA
ATTTGTACTTANGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTC
CCGACNNTTGCTNCTTTTTTTTTTTTTTAATATATTTAATAATNGAATCC
TTTGNTTCAGNTNCATAATCTGGGTCTCGGGATGTCAGTTAATGAGTGAG
AATACTGGAATTAAAGAGTAGTTTATGATTCTTGCAAAAAAAAA
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