EY705311

Overview
NameEY705311
Unique NameEY705311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.786e-62
Identity = 105/151 (69.54%), Postives = 123/151 (81.46%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSM+S+A +AT    + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 151          

HSP 2 Score: 31.5722 bits (70), Expect = 3.786e-62
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPPG 640
            +KRQVQC+SFIA KP G
Sbjct:  165 NKRQVQCVSFIAYKPAG 181          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.427e-61
Identity = 105/151 (69.54%), Postives = 127/151 (84.11%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 150          

HSP 2 Score: 28.4906 bits (62), Expect = 1.427e-61
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPS 632
            YP +F+RIIGFD    V+C + ++  P+
Sbjct:  152 YPEAFIRIIGFDNVRQVQCVSFIAYKPA 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.427e-61
Identity = 107/147 (72.79%), Postives = 125/147 (85.03%), Query Frame = 1
Query:  106 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEV 546
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEV 147          

HSP 2 Score: 28.1054 bits (61), Expect = 1.427e-61
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLP 629
            YP +FVRIIGFD    V+C + ++  P
Sbjct:  151 YPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.861e-61
Identity = 107/147 (72.79%), Postives = 125/147 (85.03%), Query Frame = 1
Query:  106 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEV 546
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEV 147          

HSP 2 Score: 28.1054 bits (61), Expect = 1.861e-61
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLP 629
            YP +FVRIIGFD    V+C + ++  P
Sbjct:  151 YPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.861e-61
Identity = 107/151 (70.86%), Postives = 125/151 (82.78%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++S+A  A    AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 149          

HSP 2 Score: 34.6538 bits (78), Expect = 1.861e-61
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPPG 640
            +KRQVQC+SFIA KPPG
Sbjct:  163 NKRQVQCVSFIAFKPPG 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.125e-61
Identity = 105/147 (71.43%), Postives = 126/147 (85.71%), Query Frame = 1
Query:  112 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            M S+A VAT   A  AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    6 MSSAAAVATGTNA--AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 150          

HSP 2 Score: 29.6462 bits (65), Expect = 4.125e-61
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  166 RQVQCISFIAYKPEG 180          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.012e-61
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKK 150          

HSP 2 Score: 28.4906 bits (62), Expect = 7.012e-61
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPS 632
            YP +F+RIIGFD    V+C + ++  P+
Sbjct:  152 YPEAFIRIIGFDNVRQVQCISFIAYKPA 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.555e-60
Identity = 104/152 (68.42%), Postives = 128/152 (84.21%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            MASS++SSA VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L ++++YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +K+
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKE 150          

HSP 2 Score: 29.6462 bits (65), Expect = 1.555e-60
Identity = 12/28 (42.86%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  555 YPHSFVRIIGFDTS--VKCSASVSLLPS 632
            YP++F+RIIGFD++  V+C + ++  P+
Sbjct:  151 YPNAFIRIIGFDSNRQVQCVSFIAYKPA 178          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.555e-60
Identity = 107/152 (70.39%), Postives = 128/152 (84.21%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            ++S M+SSA  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+H+SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +K+
Sbjct:    2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKE 150          

HSP 2 Score: 31.9574 bits (71), Expect = 1.555e-60
Identity = 13/28 (46.43%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  555 YPHSFVRIIGFDTS--VKCSASVSLLPS 632
            YPH+F+RIIGFD +  V+C + ++  P+
Sbjct:  151 YPHAFIRIIGFDNNRQVQCISFIAYKPT 178          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.491e-60
Identity = 108/153 (70.59%), Postives = 125/153 (81.70%), Query Frame = 1
Query:  100 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKK 152          

HSP 2 Score: 29.6462 bits (65), Expect = 4.491e-60
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKP 634
            +KRQVQC+SFIA KP
Sbjct:  166 NKRQVQCVSFIAYKP 180          
The following BLAST results are available for this feature:
BLAST of EY705311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS1_AMAHP3.786e-6269.54Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_MESCR1.427e-6169.54Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_PEA1.427e-6172.79Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA1.861e-6172.79Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS3_AMAHP1.861e-6170.86Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_NICSY4.125e-6171.43Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS3_MESCR7.012e-6168.87Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_SPIOL1.555e-6068.42Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MUSAC1.555e-6070.39Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP4.491e-6070.59Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705311 ID=EY705311; Name=EY705311; organism=Citrus sinensis; type=EST; length=944bp
TTTCCGACCCACGCGTCCGATTATATAAACCTACCGCCCACTGAGCATCC
TCCTATTAAGTAAAATAACTTGCAAAGCTAGAAGAAGGATCAAGTACCAA
TGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCC
AGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTC
TTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTG
CAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGC
TTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCT
TGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGATACCCACATTCATTCGTCCGAATTATCGGATTTGACACAAGCGTCA
AGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTC
CCAATTAAATTTGTGNTACCACCCATGCAATATTGTTGATTATTATTATG
TGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTA
ATTTGTACTTANGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTC
CCGACNNTTGCTNCTTTTTTTTTTTTTTAATATATTTAATAATNGAATCC
TTTGNTTCAGNTNCATAATCTGGGTCTCGGGATGTCAGTTAATGAGTGAG
AATACTGGAATTAAAGAGTAGTTTATGATTCTTGCAAAAAAAAA
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