EY659254

Overview
NameEY659254
Unique NameEY659254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNK_ECO57 (Nitrogen regulatory protein P-II 2 OS=Escherichia coli O157:H7 GN=glnK PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.115e-21
Identity = 49/109 (44.95%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  186 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERCEKA 512
            V  I++P++++ V  AL ++GI+G+TV++V+GFG Q G  E + G+E+S + F+ KVK+++ ++ DQ++ VID + + A TG+IGDGKIF+  +  VIR+RTGE  E A
Sbjct:    4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNB_RHILV (Nitrogen regulatory protein P-II OS=Rhizobium leguminosarum bv. viciae GN=glnB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20
Identity = 49/105 (46.67%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  183 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 497
            K+EAI++P+++ +V S    +G++G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V++ +  E VI+ I + A+TG IGDGKIF+  V +VIR+RTGE
Sbjct:    3 KIEAIIKPFKLDEVRSPS-GVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKVEVVLADENAEAVIEAIRKAAQTGRIGDGKIFVSNVEEVIRIRTGE 105          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNB_CYACA (Nitrogen regulatory protein P-II OS=Cyanidium caldarium GN=glnB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.464e-20
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  177 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGER 500
            F K+EAI+RP+++++V   L+  G+ G+TV++V G G Q G  ER  G E+ + + + KVK+EIVV  + ++ +I+ I+    TGEIGDGKIF+ PVS VIR+RT ++
Sbjct:    2 FSKLEAIIRPFKLEEVKVRLMTFGVPGITVTNVMGCGKQIGGIERSKGVEY-DSELIEKVKIEIVVMNEHIDELIEIIINAVWTGEIGDGKIFVSPVSSVIRIRTQDK 108          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNB_RHOCA (Nitrogen regulatory protein P-II OS=Rhodobacter capsulatus GN=glnB PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.523e-20
Identity = 51/110 (46.36%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  183 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERCEKA 512
            KVEAI++P+++ +V  AL   GI+G++V +V+GFG Q G TE + G+E+  D F+ KVK+E+V+  + V+  I+ I+  ART +IGDGKIF+  +   IR+RTGE  E A
Sbjct:    3 KVEAIIKPFKLDEVKEALQEAGIQGLSVIEVKGFGRQKGHTELYRGAEYVVD-FLPKVKIEMVLPDEMVDIAIEAIVGAARTEKIGDGKIFVSSIEQAIRIRTGETGEDA 111          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNB1_METTH (Nitrogen regulatory protein P-II 1 OS=Methanobacterium thermoautotrophicum GN=MTH_662 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  183 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 497
            K+ AI+R  +++ V  AL  MGI G+TVSDV+G G Q G  E + G ++  D  + KV++EIVV  + +E  ++ I E ARTG++GDGKIF+  V DV+R+RTGE
Sbjct:    6 KITAIIRREKLEDVKDALELMGIHGMTVSDVKGRGQQMGIRESYRGMDYCVD-LLPKVQLEIVVDSEDLERTVEAISENARTGDVGDGKIFVTDVIDVVRIRTGE 109          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNB2_METTH (Nitrogen regulatory protein P-II 2 OS=Methanobacterium thermoautotrophicum GN=MTH_664 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.719e-19
Identity = 49/110 (44.55%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  183 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERCEKA 512
            ++ AI+RP ++++V +AL   G  G+TV++VRG G Q G TE + G ++  D  + K K+EIVV+ + V+ V++ I++ A+TG+IGDGKIF+  V +V+R+RTGE  +KA
Sbjct:    6 EIVAIIRPEKLEEVKNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRID-LLPKTKIEIVVNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKA 114          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: GLNB_RHIET (Nitrogen regulatory protein P-II OS=Rhizobium etli GN=glnB PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.530e-18
Identity = 44/109 (40.37%), Postives = 76/109 (69.72%), Query Frame = 3
Query:  186 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERCEKA 512
            V AI++P+++ +V  AL  +GI+G+TV++V+G+G Q G TE + G+ ++   F+ K+K+EI V+ + V+  ++ I   A+TG+IGDGKIF+  +   +R+RTGE   +A
Sbjct:    4 VMAIIKPFKLDEVREALTAIGIQGLTVTEVKGYGRQKGHTEIYRGTVYAVS-FLPKLKIEIAVASELVDRAVEAIGASAKTGQIGDGKIFVYSIDHAVRIRTGETDSEA 111          
BLAST of EY659254 vs. ExPASy Swiss-Prot
Match: NRGB_BACSU (Nitrogen regulatory PII-like protein OS=Bacillus subtilis GN=nrgB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  174 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERCEKA 512
            + +KVE + RP   +++   L  +G+  +T S+V G G Q   TE + G +  E     ++K+EIVVSK  V+ V +      +TG  GDGKIF+  +S+ I +RTGE   +A
Sbjct:    4 QMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAHTELYRGVKI-ESNVYERLKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEA 115          
The following BLAST results are available for this feature:
BLAST of EY659254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
GLNK_ECO579.115e-2144.95Nitrogen regulatory protein P-II 2 OS=Escherichia ... [more]
GLNB_RHILV2.030e-2046.67Nitrogen regulatory protein P-II OS=Rhizobium legu... [more]
GLNB_CYACA3.464e-2045.37Nitrogen regulatory protein P-II OS=Cyanidium cald... [more]
GLNB_RHOCA4.523e-2046.36Nitrogen regulatory protein P-II OS=Rhodobacter ca... [more]
GLNB1_METTH7.716e-2047.62Nitrogen regulatory protein P-II 1 OS=Methanobacte... [more]
GLNB2_METTH1.719e-1944.55Nitrogen regulatory protein P-II 2 OS=Methanobacte... [more]
GLNB_RHIET5.530e-1840.37Nitrogen regulatory protein P-II OS=Rhizobium etli... [more]
NRGB_BACSU1.193e-1236.28Nitrogen regulatory PII-like protein OS=Bacillus s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659254 ID=EY659254; Name=EY659254; organism=Citrus sinensis; type=EST; length=827bp
CGTTTACTCCGCTCAACTTCTCTTCTCATCTCAAAGAACTTCCTCTTGTA
AATTTCGGCTCCGTGCGGCCAAGTTTGAGAATTTCTCGACTTTCTAGGCT
CAAATGCACAAGAAATGTATCAAATCTTCATGTTATCAGAGCCCAGAGCT
CACCTGATTATATTCCTGATTCTAAGTTTTACAAAGTGGAAGCCATTCTC
AGGCCCTGGAGAGTCCAGCAGGTTTCTTCGGCTTTGCTGAATATGGGTAT
CCGTGGTGTCACGGTTTCTGATGTTCGAGGTTTTGGTGCTCAAGGTGGCT
CAACAGAAAGGCATGGTGGCTCTGAATTTTCTGAGGATAAATTTGTTGCT
AAAGTGAAGATGGAGATTGTGGTGAGCAAAGACCAGGTGGAAGGAGTAAT
TGATAAAATTATGGAGGAGGCAAGGACTGGAGAAATTGGTGACGGCAAGA
TTTTTTTGGTACCTGTCTCAGATGTCATAAGAGTTCGAACTGGTGAACGA
TGTGAAAAAGCTGATAGGATGGCAGGAGGATGGTCGGACATATCTTCAGC
TGTGTGACCTTGTACTGATTTGTCGTATGATTTTGAAGCAAGATTAACAT
CAAAACCTCTTAAGGTTTAGAAGTTTATTGTGCCATTATTCTGTCCTGCA
TGGGCTTGATAAAAAAACCAGATTAAAAAACTGGCATTGGGCCTGCATCT
ACAAGACAGGTTTCCTTTTCTTAAAAAAGGAGAGAGGGAGAAAGGAGATT
TCCTACCCTTTTTTATGATTTAAATCCTCAACCCAAAAAAAGAATTTCTA
GCCTTATCAGTNAAAAAAAAAAAAAAA
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