EY659248

Overview
NameEY659248
Unique NameEY659248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 3.265e-115
Identity = 191/290 (65.86%), Postives = 224/290 (77.24%), Query Frame = 2
Query:    2 WALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXTVSQRNRXRYXL----TFLGD*XKHG*RHYVSDMGDWCYYQTDHSLTLFQS 859
            WA+FVLGHDCGHGSFS+   LNSVVGH+LHS ILVPYHGWRISHRTHHQNHGHVENDESW PL E++Y+ L  +TR LR+ +P P+LAYP YL  RSPGK GSHF+P S LF PSERK + TST CW+ M   L+ LSFV GP+ +LK+YGVPY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRG LTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL+++T+AA+ VLG      +      +    + +    K    HYVSD GD  +Y+TD  L ++ S
Sbjct:   94 WAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKD---HYVSDTGDIVFYETDPDLYVYAS 380          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 7.428e-43
Identity = 97/249 (38.96%), Postives = 145/249 (58.23%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEK----IYRTLDSAT-RFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIESTEAARPVLGN 715
            L+V+GH+CGH +FS+   ++  VG +LHS ++ PY  W+ SHR HH N   ++NDE + P S+      Y+ L+    R L   I F  L +P YL++   GK      +HFDP S +F   ER  V+ S +    + A+L G+   +   G   +  +YG+P     ++ D++TYLHH      LP Y   EW++LRG L+T+DRD+G+ N++ HD+  THV+HHLF  IPHYH  E+ +A   VLG+
Sbjct:   93 LWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITF-TLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHH--THLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGD 335          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.687e-40
Identity = 91/246 (36.99%), Postives = 133/246 (54.07%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL-----DSATRFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIESTEAARPVLGN 715
            ++V+ H+CGH +FS+   L+  VG + HS +LVPY  W+ SHR HH N G +E DE + P  +   +       +   R +   + F +L +P YL     G+       HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHY+ +E+T+A +P+LG+
Sbjct:  100 IWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQH--THPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGD 342          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.311e-39
Identity = 90/245 (36.73%), Postives = 133/245 (54.29%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL-----DSATRFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIESTEAARPVLG 712
            ++V+ H+CGH +FS+   L+ +VG +LHS++LVPY  W+ SHR HH N G +E DE + P  +   +       +   R L   +    L +P YL     G+       H+DP   ++   ER  +  S     A+   L  L+   G   ++ +YGVP  +   +L L+T+L H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +E+T+A +P+LG
Sbjct:  100 VWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTL-TLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQH--THPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILG 341          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.982e-39
Identity = 94/255 (36.86%), Postives = 133/255 (52.16%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP------------LSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRS------PGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIESTEAARPVLGN 715
            ++V+ H+CGH +FS+   L+  VG + HS +LVPY  W+ SHR HH N G +E DE + P            L+  + RT+    +F         L +P Y W+ +      P     HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +E T+A +P+LG+
Sbjct:  100 VWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQF--------TLGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQH--THPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGD 343          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.473e-38
Identity = 92/245 (37.55%), Postives = 133/245 (54.29%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP--------LSEKIYRTLDSATRFL-RFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYHLIESTEAARPVLG 712
            ++V+ H+CGH +FS    ++ VVG  LHS++LVPY  W+ISHR HH N G ++ DE + P         S+ +   L  A   L    I +P+    F +  R      SH+ P + ++   ER  +  S V   ++   L  ++ + G + LL +YGVP  I   +L  +TYL H      LP Y   EW +L+G L T+DRDYG  N + HH   THV HHLF  +PHYH +E+T A +P+LG
Sbjct:  104 VWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMY-LAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQH--THFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILG 345          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.948e-36
Identity = 92/265 (34.72%), Postives = 132/265 (49.81%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEK--------------------IYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXTV 724
            ++VL H+CGH SFS    LN+ VG +LHS +LVPYH WRISH  HH+  GH+  D+ + P +                      ++   ++    L + +   L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y VPY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  E+T   + +LG   V
Sbjct:  107 IWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQH--TDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYV 369          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.156e-36
Identity = 91/265 (34.34%), Postives = 132/265 (49.81%), Query Frame = 2
Query:    8 LFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEK--------------------IYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXTV 724
            ++VL H+CGH SFS    LN+ VG +LHS +LVPYH WRISH  HH+  GH+  D+ + P +                      ++   ++    L + +   L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  E+T   + +LG   V
Sbjct:  107 IWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQH--TDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYV 369          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.935e-23
Identity = 70/237 (29.54%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAAL-LVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDYG-WFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLG 712
            FV+GHDCGH SFS +  +N  VGH+L   I+ P+H WRI H  HH+    +E D +W P  ++ Y+   +A +F+  ++ + L     +           HFD     F   +R+ V  S++     AA+    +   +G    +K + +P+ +F  W+   T LHH   +  +P+   ++W      L+ T+  +Y  W   + HDI  H+ HH+   IP Y+L   T   R + G
Sbjct:   85 FVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRKEEYQ---NAGKFM--QVTYDLFRGRAWWIGSILHWASIHFDWTK--FEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIAD--IPFREPEQWHEAESQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGG 312          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.006e-23
Identity = 71/228 (31.14%), Postives = 107/228 (46.93%), Query Frame = 2
Query:   11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAY-PFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHL 676
            FV+GHDC H SFS++  +  +VG L    ++ PY  WR  H  HH     +  D +WHP    +++    +T  LR  I   +  Y PF  W         HFD     F PSE   V  S  C    A + +G   ++   G M  +K + +P+  +  W+   T +HH      +P+   +EW+  +  L  T+  DY  W   + HDI  H+ HH+ P+IP Y+L
Sbjct:  161 FVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHP----VWKDEFESTPLLRKAI---IYGYGPFRCWMSIAHWLMWHFDLKK--FRPSEVPRVKISLAC--VFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTA--PYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNL 375          
The following BLAST results are available for this feature:
BLAST of EY659248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3E_ARATH3.265e-11565.86Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL7.428e-4338.96Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD6E_ARATH7.687e-4036.99Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN1.311e-3936.73Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU4.982e-3936.86Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN2.473e-3837.55Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORAP3.948e-3634.72Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS5.156e-3634.34Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
DESA_SPIPL2.935e-2329.54Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
FAD6C_SOYBN5.006e-2331.14Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659248 ID=EY659248; Name=EY659248; organism=Citrus sinensis; type=EST; length=903bp
TTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAAGCTTTTCAA
ATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCTTCAATT
CTGGTTCCTTATCATGGATGGAGAATTAGCCACAGGACTCATCATCAAAA
CCATGGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTGAGAAAA
TTTACAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAAATTCCT
TTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCCGGGGAA
GACTGGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAAGTGAGA
GGAAGGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCTGCTTTG
CTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAAACTCTA
TGGCGTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACTTACT
TGCATCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAA
TGGAGTTACTTAAGGGGATGGCTCACAACACTTGATCGTGACTATGGATG
GTTCAATAACATCCACCACGATATTGGGACCCACGTCATACATCACCTCT
TCCCTCAGATCCCGCATTACCACTTAATAGAAAGCACTGAGGCTGCTAGA
CCAGTTCTTGGAAATNATACCGTGAGCCAAAGAAATCGGNACCGATACCN
TTTAACCTTTTTGGGAGATTAATANAAGCATGGGTAAAGACACTATGTTA
GTGACATGGGCGATTGGTGTTACTACCAGACCGACCACAGCTTAACGCTC
TTCCAATCAGGGTAAAGCTGCAGCTTNCTTATCTGACCGGCGTATTTAAT
ACC
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