EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CYCTA (Photosystem I assembly protein ycf3 OS=Cycas taitungensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.193e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRS+ N NF DKTF+IVA+ILLRIIPT  GEKEAFTYYRDG +
Sbjct:    1 MPRSQRNDNFTDKTFTIVADILLRIIPTAPGEKEAFTYYRDGVM 44          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ANGEV (Photosystem I assembly protein ycf3 OS=Angiopteris evecta GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.193e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+IVA+ILLR+IPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRVIPTTQREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PINTH (Photosystem I assembly protein ycf3 OS=Pinus thunbergii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.227e-11
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+IVA+ILLRIIP   GEKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PINKO (Photosystem I assembly protein ycf3 OS=Pinus koraiensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.602e-11
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+I+A+ILLRIIP   GEKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIIADILLRIIPMAPGEKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PSINU (Photosystem I assembly protein ycf3 OS=Psilotum nudum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.733e-11
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+I A+ILLR+IPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIAADILLRVIPTTRREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CHAGL (Photosystem I assembly protein ycf3 OS=Chaetosphaeridium globosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.570e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF++VA+ILLR+IPTT  EKEAF+YYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVVADILLRVIPTTRREKEAFSYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_NEPOL (Photosystem I assembly protein ycf3 OS=Nephroselmis olivacea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.662e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF++VA+ILL+++PTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVVADILLKVLPTTRREKEAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CHAVU (Photosystem I assembly protein ycf3 OS=Chara vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.089e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+I+A+ILLRI+PT+  E+EAFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIIADILLRIVPTSQREREAFTYYRDG 42          
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ANTFO (Photosystem I assembly protein ycf3 OS=Anthoceros formosae GN=ycf3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.952e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+ N NFIDKTF+I+A+ILL+IIPTT  EKEAFT+YRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIIADILLQIIPTTQREKEAFTHYRDG 42          
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_CYCTA7.193e-1277.27Photosystem I assembly protein ycf3 OS=Cycas taitu... [more]
YCF3_ANGEV7.193e-1280.95Photosystem I assembly protein ycf3 OS=Angiopteris... [more]
YCF3_PINTH1.227e-1180.95Photosystem I assembly protein ycf3 OS=Pinus thunb... [more]
YCF3_PINKO1.602e-1178.57Photosystem I assembly protein ycf3 OS=Pinus korai... [more]
YCF3_PSINU2.733e-1178.57Photosystem I assembly protein ycf3 OS=Psilotum nu... [more]
YCF3_CHAGL3.570e-1176.19Photosystem I assembly protein ycf3 OS=Chaetosphae... [more]
YCF3_NEPOL4.662e-1173.81Photosystem I assembly protein ycf3 OS=Nephroselmi... [more]
YCF3_CHAVU6.089e-1173.81Photosystem I assembly protein ycf3 OS=Chara vulga... [more]
YCF3_ANTFO7.952e-1176.19Photosystem I assembly protein ycf3 OS=Anthoceros ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
back to top