EY659162

Overview
NameEY659162
Unique NameEY659162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ARP6_DEBHA (Actin-like protein ARP6 OS=Debaryomyces hansenii GN=ARP6 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14
Identity = 73/263 (27.76%), Postives = 113/263 (42.97%), Query Frame = 1
Query:   91 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE----AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN-------TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGKRKVR 834
            V+DNGS   KAGF+  DAP           +HQ  +        YVG+E      +  G++  K P +HG + +W+  + +W +TF     N+   A   H + LTE P           QI+FE +         PA  V    + S  +      +V+DSG   +  VPI         + +L + G  L   L +I++ R Y      E  ++  IKEK C++A DFE+ +   A+       + LPD +  T G  K +
Sbjct:    7 VIDNGSYNIKAGFSNQDAPI----------KHQNALSKARDGLIYVGNEYLVQTNNYSGMI-FKRPYDHGHLISWETEKAVWDYTFNKASPNQELDASITH-LTLTETPFQLPQLSMNTDQIVFEEYGFNEYYRCAPASLVPWSNLGSSESKNNDFTLVVDSGYSGTWIVPIIYQNVYWKGVKKLPIGGAALNGLLREIISFRHYDIAD--EPVLINTIKEKTCFMATDFEKSL---ANRKKYRCEFILPDFKTTTTGFVKTK 252          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ARP7_YEAST (Actin-related protein 7 OS=Saccharomyces cerevisiae GN=ARP7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.514e-14
Identity = 47/185 (25.41%), Postives = 88/185 (47.57%), Query Frame = 1
Query:   88 LVVDNGSGMCKAGFAGDDAPRAVFPS-IVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK---ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 630
            +V+ NGS    AGF+  + P+ + PS  + R    G    +    + +   A+ + G          G+  NWD +E  W + +  +L+V+PEE P+++T    N K   A  E+  ++ F+  N P   + I+ +    + G+++  V+D G    +  PI +G  + +A++R    G D  D+
Sbjct:    8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFGG-DFLDF 191          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ARP4_USTMA (Actin-related protein 4 OS=Ustilago maydis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  364 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE-RGYSFTTTAEREIVR 696
            EHP+LLTE   N + +REK+T++ FET  +PA Y+A ++VLS +A+G+ + +V+D G     T+PI +G+ L   I R +  G  +   L+  L   RG +F     + +++
Sbjct:  181 EHPLLLTEPAWNSRESREKLTELAFETLGSPAFYLANRSVLSSFAAGKPSSLVIDVGSTNVSTIPIVDGFILRKGIYRHNNGGEAINRALLYSLHHGRGATFAGVTPQYVIK 292          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.768e-13
Identity = 48/149 (32.21%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  331 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 744
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  N PA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT +L +++ +R  +F +      VR IKEKLCYVA D+E E
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYEAE 332          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.768e-13
Identity = 48/149 (32.21%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  331 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 744
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  N PA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT +L +++ +R  +F +      VR IKEKLCYVA D+E E
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYEAE 332          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: CT134_HUMAN (Putative uncharacterized actin family protein C20orf134 OS=Homo sapiens GN=C20orf134 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  466 VAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGKRKVRCPXSLF 852
            +A  A+L+L ++G  +G+ +++G GV H  PIY G++   A  RL++AG  L+ YL  +L          A  R+ +  +K++ CYV+LDFE ++   A       S+ + +G  + +   + RCP  +F
Sbjct:    1 MASTALLALCSTGAFSGLAVEAGAGVCHATPIYAGHSWHQATFRLNVAGSTLSRYLRDLLVAANPDLLQQALPRKAITHLKKRSCYVSLDFEGDLRDPARHH--PASFSVGNGCCVCLSSERFRCPEPIF 128          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 56/185 (30.27%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  331 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGKRKVRCPXSLF 852
            T +  ++V P   P++++  PL       + KA+R ++   +F      N PA+    QAVL+LYA+ RT+GIV++ G  V   +PI  G  +    +  +      LT +L + + E   SF +      VR +KEKLCYVALD++ E+     S   + S E+      T+ K + +    LF
Sbjct:  182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENNISFQSL---YTVRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILF 357          
BLAST of EY659162 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  709 KLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGKRKVRCPXSLF 852
            KL YVALD+EQE+ T+ SSSS EK+YELPDGQVIT+G  + RC   LF
Sbjct:    1 KLAYVALDYEQELETSKSSSSQEKNYELPDGQVITVGAERFRCAEVLF 48          
The following BLAST results are available for this feature:
BLAST of EY659162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 488
Match NameE-valueIdentityDescription
ARP6_DEBHA1.468e-1427.76Actin-like protein ARP6 OS=Debaryomyces hansenii G... [more]
ARP7_YEAST9.514e-1425.41Actin-related protein 7 OS=Saccharomyces cerevisia... [more]
ARP4_USTMA1.623e-1335.71Actin-related protein 4 OS=Ustilago maydis GN=ARP4... [more]
ARP8_ORYSJ2.768e-1332.21Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI2.768e-1332.21Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
CT134_HUMAN1.374e-1230.77Putative uncharacterized actin family protein C20o... [more]
ARP8_ARATH3.997e-1230.27Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]
ACT_PINCO7.538e-1166.67Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-A11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659162 ID=EY659162; Name=EY659162; organism=Citrus sinensis; type=EST; length=904bp
CTCAAGTGACGTTTGTCCCAGTGTTCCACGATTCTCTAACGTACTAATTT
CAACAAATTCAAAATGTGTGACGAAGAAGTAGCAGCACTCGTTGTCGACA
ATGGATCCGGTATGTGCAAAGCCGGTTTTGCCGGTGATGATGCTCCCAGA
GCCGTATTCCCCTCAATCGTCGGTCGCCCAAGGCATCAGGGTGTCATGGT
TGGTATGGGACAAAAAGACAGTTATGTTGGAGATGAAGCTCAATCTAAGA
GAGGTATCCTTACCTTGAAATACCCCATCGAACACGGTATTGTCACAAAC
TGGGACGATATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCG
AGTAGCGCCAGAAGAACACCCTGTCCTCTTGACAGAAGCTCCCCTGAACC
CAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTTTGAAACCTTCAAC
ACACCCGCCATGTATGTAGCTATCCAAGCTGTTCTCTCTCTGTATGCTTC
TGGTCGTACCACTGGTATCGTTCTTGATTCAGGAGATGGTGTTTCCCACA
CAGTGCCAATCTATGAAGGTTATGCCTTACCTCATGCTATCCTCCGTTTG
GACTTGGCTGGTCGTGACTTGACCGACTACCTCATGAAGATCCTTACAGA
AAGAGGTTACAGTTTCACAACCACAGCTGAAAGAGAAATCGTNCGTGATA
TCAAAGAAAAATTATGTTATGTAGCTTTAGACTTTGAACAAGAAATGGCC
ACCGCTGCTTCCTCAAGCTCCCTAGAAAAATCCTATGAATTGCCTGATGG
TCAAGTAATCACAATTGGAAAACGAAAGGTCCGTTGCCCANAAAGCCTAT
TCAGCCATCATTCTTGGTATGGAAGCTGNGGTATNCATGAACTACTTACA
CTCA
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