EY659140

Overview
NameEY659140
Unique NameEY659140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:32..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM0 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.938e-16
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK  G+DL K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROMS (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain AS9601) GN=rpmB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.717e-16
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            R C  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK  G+DL+K
Sbjct:    3 RACELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLKK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM5 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.773e-16
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q VNLQ +++WW+ GK+++ +++STKALK+I+K GLD VAK  G+DL K
Sbjct:    3 RVCELTGARANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWINIKISTKALKSIQKVGLDKVAKTNGVDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNPW (50S ribosomal protein L28 OS=Synechococcus sp. (strain WH7803) GN=rpmB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.146e-15
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG K+N    VS S+ +T K Q  NLQ +++WW  GKR+V LR++T+ALKTI+K GL A AK  GIDL +
Sbjct:    3 RVCQLTGTKANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWVNLRITTRALKTIQKKGLGAYAKSLGIDLAR 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNR3 (50S ribosomal protein L28 OS=Synechococcus sp. (strain RCC307) GN=rpmB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.496e-15
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  +GK++N    VS S+ +T K Q VNLQ +++WW  G R+VKLR+ST AL+TI+K GL A AK+ GI+L K
Sbjct:    3 RVCQLSGKRANNGMAVSHSHVRTKKLQQVNLQQRRLWWAEGNRWVKLRVSTSALRTIQKKGLGAYAKELGINLAK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROMM (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R++KLR+ST+ALKTI+K GL   AK  GIDL K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKKGLGVYAKSLGIDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROMA (50S ribosomal protein L28 OS=Prochlorococcus marinus GN=rpmB PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  +G ++N    VS S+ +T K Q  NLQ +++WWE GK+++ +R+ST  LKTI+K GLD+ AK  GIDL+K
Sbjct:    3 RVCELSGTRANNGMAVSHSHIRTKKLQQANLQKRRLWWEEGKKWLNIRVSTSTLKTIQKKGLDSYAKSQGIDLKK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM4 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  +G ++N    VS S+ +T K Q  NLQ +K+WWE GK+++K+R++T+ LKTI+K GL++ AK  GIDL K
Sbjct:    3 RVCDLSGTRANNGMAVSHSHIRTKKLQQANLQQRKLWWEEGKKWIKVRVTTRTLKTIQKKGLNSYAKAMGIDLSK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM3 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R++KLR+ST+ALKTI+K GL   AK  GIDL K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKKGLGVYAKSLGIDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNSC (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9605) GN=rpmB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R+VKLR++T+ALKTI+K GL A AK  GI+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWVKLRVTTRALKTIQKKGLGAYAKSLGINLAK 77          
The following BLAST results are available for this feature:
BLAST of EY659140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL28_PROM03.938e-1653.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROMS6.717e-1652.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM58.773e-1650.6750S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_SYNPW1.146e-1553.3350S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNR31.496e-1553.3350S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_PROMM3.334e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROMA3.334e-1549.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM43.334e-1549.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM33.334e-1552.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_SYNSC5.686e-1552.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659140 ID=EY659140; Name=EY659140; organism=Citrus sinensis; type=EST; length=823bp
CCACGCGTCCGATAACAAAATACACAGGGAATCGAAAAGAATGGCAACAA
TGGCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTTT
CGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGCAGTCTCCTCCTC
GGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGT
ACAGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCG
GGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAA
ATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGC
GGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAG
CGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAA
AAATGGATTGGATGCTGTTGCTAAGAAGGCTGGAATAGATCTTCGCAAGG
AATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTT
GTATGCTTACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTT
CTTTTTGCTTGTTCTGTTGAATTCTTTGTTCTGTTGAATTCTTCCCAATT
AAATGAGAATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTT
TGCATGTCGTCATGAGGCTTTGCGTTGATGGCTCTATGAGCATTCAGCGC
GTGTTGTATGATCTTCTATNCGAAGAAGAGAATTGTAAATACAGAACAGC
ATTTTTGCTGAAAAAAAAAAAAA
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