EY659138 | Citrus Genome Database

Overview


Name	EY659138
Unique Name	EY659138
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	667

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1567	contig	Csv1_Contig1567:42..710.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA25_ARATH (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            MKV+AAYLLA L GN  PS  DLK I+ SVGAE D E+I+   S +K +D+TELIA GREK+
Sbjct:    1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKM 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_SCHPO (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe GN=rpp201 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            MK +AAYLL  +GG   PSA D++++L +VG EA+ ERIE L++E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADDER+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_PODAN (60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            MK +AAYLL  LGG A PSA D+K +L SVG EAD +R++ L+SE++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA4_SCHPO (60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe GN=rpp202 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            MK +AAYLL  +GG   PSA D++++L +VG EA+ ER+E L+SE+ GK+I ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            MK +AAYLL  LGGN  PSA D+K +L SVG +AD++R+  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_HORSE (60S acidic ribosomal protein P2 OS=Equus caballus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            M+ +A+YLLA LGGN  PSA D+K IL SVG EADD+R++ ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA6_SCHPO (60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe GN=rpp203 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            MK +AAYLL  +GG   PSA D++++L +VG E++ ER+E L+ E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_MOUSE (60S acidic ribosomal protein P2 OS=Mus musculus GN=Rplp2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62

[Close]

BLAST of EY659138 vs. ExPASy Swiss-Prot
Match: RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1

Query:   49 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 234
            M+ +A+YLLA LGGN+ PSA D+K IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62

The following BLAST results are available for this feature:

BLAST of EY659138 vs. ExPASy Swiss-Prot

BLAST of EY659138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28


Match Name	E-value	Identity	Description
RLA25_ARATH	1.265e-13	61.29	60S acidic ribosomal protein P2-5 OS=Arabidopsis t...	[more]
RLA2_SCHPO	2.157e-13	58.06	60S acidic ribosomal protein P2-alpha OS=Schizosac...	[more]
RLA2_RAT	4.806e-13	58.06	60S acidic ribosomal protein P2 OS=Rattus norvegic...	[more]
RLA2_PODAN	4.806e-13	59.68	60S acidic ribosomal protein P2 OS=Podospora anser...	[more]
RLA4_SCHPO	6.276e-13	56.45	60S acidic ribosomal protein P2-beta OS=Schizosacc...	[more]
RLA2_FUSCU	6.276e-13	59.68	60S acidic ribosomal protein P2 OS=Fusarium culmor...	[more]
RLA2_HORSE	8.197e-13	56.45	60S acidic ribosomal protein P2 OS=Equus caballus ...	[more]
RLA6_SCHPO	1.071e-12	54.84	60S acidic ribosomal protein P2-C OS=Schizosacchar...	[more]
RLA2_MOUSE	1.071e-12	56.45	60S acidic ribosomal protein P2 OS=Mus musculus GN...	[more]
RLA2_HUMAN	1.071e-12	56.45	60S acidic ribosomal protein P2 OS=Homo sapiens GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-001-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659138 ID=EY659138; Name=EY659138; organism=Citrus sinensis; type=EST; length=667bp
CCACGCGTCCGCGATCTTTATCGTCTCACCTCTCTGCTATAAGCAAAAAT
GAAGGTGATCGCTGCTTACTTGCTCGCCGTTTTGGGTGGCAACGCCAAAC
CATCGGCCGATGACTTGAAGAACATTCTTGGATCAGTTGGAGCTGAAGCT
GATGATGAGAGAATAGAGTTTCTCTTGTCAGAAGTCAAGGGCAAGGATAT
TACCGAGCTAATTGCATCCGGAAGGGAGAAGTTGGCATCAGTGCCATCAG
GTGGTGGTGTTGCTGTTGCTGCATCAGCACCTGCTGCAGGTGGTGCTGCT
GCTCCTGCCGCTGAGGCTAAGAAAGAGGAGAAGGTCGAGGAGAAGGAAGA
ATCTGATGATGACATGGGTTTCAGCCTTTTCGACTAAGCTCTCAATGTTG
CTTTTTCTGTATGAAGGATTATTATATTTGGTCATTAGTGTTTTTATTTG
AATGTTACAAGTTTTTGGTTTGTAGTTGGATATGGTTTTCCCATTTTAGA
GATTGTTTGAACTCTTGGAAGTTTTGTTTAGTTAATGAGGTGAAATCNAC
ATTTCTGGTCAATTCATTTTTATTATCCTAAAATCTAATGATCTATACTA
TGTTGGAATCATTTTGGTAGTCATCTATTTAAGAAATATGTAGTTCTTTT
AAAAAAAAAAAAAAAAA