EY659102

Overview
NameEY659102
Unique NameEY659102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13851 contig Csv1_Contig13851:406..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   56 STMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA-TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            S    AVAV+ GT+  +G V+ + + SGPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   ++G+A T  +   IPL+G NSV+GR  VVH             S  + + G  +A G IGL+
Sbjct:   62 SAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLT 214          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            AV+V+ GT+  +G V+ + +  GPTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   +EG+A   I    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            AVAV+ GT+  +G V+ + E  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P G             G L NI   ++G+A   I    IPL+G N+V+GR  VVH             S  + + G  +A G +GL+
Sbjct:   71 AVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLT 218          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHS 385
            ++ AVAVI G N  KG++ F  + +G T VKG ++GL PG H   IH  G+ +N   STGP F P   D           G L N+   ++G+A   +  T IPLSG +S++GR +VVH+
Sbjct:    3 VIKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHA 122          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP-----AGAD------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            + AV V+ GT    GTV F     GP T+KGS++GL PG H   +H +G+ +N  IS GP + P      G D      G L N+     G+A FEI  + + LSG  S+IGR LVVH     D G G
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEK-EDDLGKG 127          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 57/148 (38.51%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            AVAV+ G +  +G V+ + E   PTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   + G+A   I    IPL+G NSVIGR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP------AGAD-----GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            AVAV+ G +  +G V+ S +  GPTTV   ++GL PG H   +H YG+ +N  +STG  F P      A  D     G L NI   ++G+A   +    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   68 AVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 215          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 57/148 (38.51%), Postives = 74/148 (50.00%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            AVAV+ GT+   G V+   E  GPTTV   ++GL PG H   +H YG+ +N  ISTG  F P     GA        G L NI    +G+A   I    IPLSG+NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   67 AVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 214          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  104 KGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPA----GAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            +G V+ S E +GPTTVK  L+GL PG H   +H +G+ +N  +STG  F P     GA        G L NI   S+G+A   I    IPLSG +SVIGR LVVH             S  + + G  +A G +GL+
Sbjct:    3 EGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 139          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            + AV V+ G+   KGT++F  +  G  TV G +SGL PG H   IH YG+++N   S+G  F P     GA        G L NIT  S G+AT  I  + I L+G +S+IGR +VVH+    D G G
Sbjct:    3 IKAVCVLVGSV--KGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAG-EDDLGKG 127          
The following BLAST results are available for this feature:
BLAST of EY659102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODCP_ARATH1.334e-1636.60Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_PEA1.742e-1638.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLCS2.276e-1636.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC2_MESCR2.276e-1640.00Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_PRIGL5.070e-1640.63Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODCP_MEDSA4.292e-1538.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_SOLLC5.605e-1536.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ZANAE1.249e-1438.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_PINSY8.094e-1439.42Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_HALRO1.381e-1340.63Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659102 ID=EY659102; Name=EY659102; organism=Citrus sinensis; type=EST; length=699bp
CCACGCGTCCGTCCATCTTCATTTTCCTCTCTCTAAGGGCGTTGTGATAT
CACACAGCACAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGT
CGCAAGGGAACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGT
GAAAGGAAGCCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTC
ACACTTACGGAAACATAAGCAATGATTGGATATCAACTGGACCCCCTTTT
AAACCTGCTGGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGA
GGGTATTGCTACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAA
ATTCCGTTATTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGAT
CCTGGTGATGGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGG
CTTCTCTCCATACCATAATAAATACATTTGACATGATGTCGAATGTGTCT
TGAATACTTAATAAAATAAATAATATGTTGTACGAATCAAAATCTGGCTA
TAATAAAATAAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGT
AGAATGTGGCCGTAAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACT
GTCCTTAAGACTATTTCTACTCCCTTAAAAAAAAAAAAAAAAAAAAGGG
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