EY659102

Overview
NameEY659102
Unique NameEY659102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13851 contig Csv1_Contig13851:406..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 51/129 (39.53%), Postives = 65/129 (50.39%), Query Frame = 2
Query:   68 NAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDGV 415
            N +AV+ G N   G + F  E  G PTT+ G + GL PG H   +H YG+ +N  IS GP F P               G L NI   ++G A  +I  K + L G NS+IGR LVVH+    D G GV
Sbjct:    4 NRIAVLRGDNV-SGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHAD-QDDLGKGV 130          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 47/129 (36.43%), Postives = 65/129 (50.39%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGS-LSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            ++ AV V+ G     GTV F  EG+     KG  L GL PG+H   +H +G+ +N  IS GP F PA              G L N+T  + G+A  +I   I L+G  S+IGR +V+H   + D G G
Sbjct:    2 VLKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITDKISLTGPYSIIGRTMVIHEK-ADDLGRG 129          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 51/131 (38.93%), Postives = 67/131 (51.15%), Query Frame = 2
Query:   62 MVN-AVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            MVN AV V+ GT    GTV F+ EG   P  V G ++GL PG H   +H +G+ +N  IS GP F P               G L N+T  + G+A  EI    + LSG +S+IGR +V+H     D G G
Sbjct:    1 MVNKAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEK-EDDLGKG 130          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEG-SGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDGV 415
            AVAV+ G  G  GTV FS +  S P  +KG + GL PG H   +H YG+ +N   S GP F P               G L N+   ++G+A FEI    + + G ++V+GR LVVH+  + D G GV
Sbjct:    5 AVAVLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAG-TDDLGKGV 131          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            AV V+ G    +G + F  + +GP  VKG ++GL  G H   +H +G+ +    S GP F P               G L N+T  ++G+A   I  + I LSG NS+IGR +VVH  P  D G G
Sbjct:    5 AVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPD-DLGKG 129          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 2
Query:   71 AVAVITGTNGR-KGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDGV 415
            A+AV+   NG   GT+ F  +    TT+ G + GL PG H   +H YG+ +N  IS GP F P               G L NI   ++G A  +I  K + L G NS+IGR LVVH+    D G GV
Sbjct:   48 AIAVLHSDNGNINGTIHFQ-QDKNSTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHAD-QDDLGKGV 173          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKTI-PLSGTNSVIGRGLVVHS 385
            MVNA+ +I G  G +G V+ S E  G P  + G++SGL PG H + +H +G+ SN  IS G  + P   +           G L NI   S G+AT  I  TI  L G  SV+GR +V+HS
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHS 120          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 45/126 (35.71%), Postives = 62/126 (49.21%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            AV V+ G    +GT+ F ++G     V G++ GL  GDH   +H +G+ +    S GP F P               G L N+T   +G+AT  I    I LSG +S+IGR +VVH  P  D G G
Sbjct:    5 AVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPD-DLGRG 129          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 47/150 (31.33%), Postives = 72/150 (48.00%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            + AV V+ G    +GT+ F  +GSGP  V G+++GL  G+H   +H + + +    S GP F P               G L N+T   +G+A   I  + I LSG  S+IGR +VVH             S+ + + G  +A G IG++
Sbjct:    3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGIA 152          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 47/129 (36.43%), Postives = 62/129 (48.06%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            MV AV V+ G+   KG V F  +  G  TV+G + GL  G+H   IH +G+ +N  +S GP F P   +           G L N+T    G+A F+     I L G  S+IGR  VVH     D G G
Sbjct:    1 MVKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNVTAEG-GVAQFKFTDPQISLKGERSIIGRTAVVHEK-QDDLGKG 127          
The following BLAST results are available for this feature:
BLAST of EY659102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC_BRUPA1.803e-1339.53Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC_XIPGL2.355e-1336.43Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_DANRE2.355e-1338.93Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_HAECO3.076e-1338.28Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_CAVPO4.017e-1335.71Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODE_BRUPA1.169e-1238.28Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC6_DICDI1.169e-1239.67Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
SODC_PIG1.994e-1235.71Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_CANFA1.994e-1231.33Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC1_XENLA3.401e-1236.43Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659102 ID=EY659102; Name=EY659102; organism=Citrus sinensis; type=EST; length=699bp
CCACGCGTCCGTCCATCTTCATTTTCCTCTCTCTAAGGGCGTTGTGATAT
CACACAGCACAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGT
CGCAAGGGAACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGT
GAAAGGAAGCCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTC
ACACTTACGGAAACATAAGCAATGATTGGATATCAACTGGACCCCCTTTT
AAACCTGCTGGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGA
GGGTATTGCTACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAA
ATTCCGTTATTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGAT
CCTGGTGATGGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGG
CTTCTCTCCATACCATAATAAATACATTTGACATGATGTCGAATGTGTCT
TGAATACTTAATAAAATAAATAATATGTTGTACGAATCAAAATCTGGCTA
TAATAAAATAAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGT
AGAATGTGGCCGTAAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACT
GTCCTTAAGACTATTTCTACTCCCTTAAAAAAAAAAAAAAAAAAAAGGG
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