EY659102

Overview
NameEY659102
Unique NameEY659102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13851 contig Csv1_Contig13851:406..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 51/148 (34.46%), Postives = 68/148 (45.95%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            AV V+ G    + T+ F  +G+GP  VKG ++GL  G H   +H +G+      S GP F P               G L N+T  S G+A   I    I LSG  SVIGR LVVH             S+ + + G  +A G IG+S
Sbjct:    5 AVCVLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGIS 152          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 51/129 (39.53%), Postives = 64/129 (49.61%), Query Frame = 2
Query:   68 NAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDGV 415
            NA+AV+ G     G + F  +  G PTTV G + GL PG H   IH YG+ +N  IS GP F P               G L NI   ++G A   I  + I L G NS+IGR +VVH+    D G GV
Sbjct:    4 NAIAVLRGDTV-SGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHAD-QDDLGKGV 130          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP------AGAD-----GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            + AV V+ G    +GT+ F  + SG P  + G ++GL  G H   +H YG+ +    S GP F P        AD     G L N+T   +G+A   I  + I LSG +S+IGR +VVH             S+ + + G  +A G IG++
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGIA 153          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            + AV V+ G    +G + F  +GSGP  V G ++GL  GDH   +H +G+ +N   S G  F P G             G L N+T    G+A  EI    I L+G + +IGR +VVH+  S D G G
Sbjct:    4 LKAVCVMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNVTAKG-GVAEVEIEDSVISLTGPHCIIGRTMVVHAK-SDDLGRG 129          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 49/151 (32.45%), Postives = 72/151 (47.68%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSVE-GSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            + AV V+TGT G KG V F+ E  +GP  V    SGL  G H   +H +G+ +N   S G  F P   +           G L N+   ++G A +    K I L+G++S+IGR +V+H             S  + + G  +A G IGL+
Sbjct:    1 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGLA 151          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            +V AV VI G    KGTV F  EG G P  V G ++GL  G H   +H +G+ +N  +S+GP F P   +           G L NI    +G     I    I L G NS+IGR +VVH+ P  D G G
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPD-DLGKG 128          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            MV AV V+ G+   KG V F  +  G  +V+G + GL  G H   IH +G+ +N  +S G  F P   +           G L N+T    G+A F+I  + I L G NS+IGR  VVH   + D G G
Sbjct:    1 MVKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAEG-GVAQFKITDSLISLKGPNSIIGRTAVVHEK-ADDLGKG 127          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 45/126 (35.71%), Postives = 62/126 (49.21%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            AV V+ G    +GT+ F  +G     V GS++GL  GDH   +H +G+ +    S GP F P               G L N+T    G+A  +I  + I LSG +S+IGR +VVH  P  D G G
Sbjct:    5 AVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPD-DLGRG 128          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 49/151 (32.45%), Postives = 72/151 (47.68%), Query Frame = 2
Query:   65 VNAVAVITGTNGRKGTVSFSV-EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 439
            + AV V+ G    +GT++F   E +GP  V GS++GL  G H   +H +G+ +    S GP F P               G L N+T   +G+A   I    I LSG +S+IGR LVVH             S+ + + G  +A G IG++
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIA 153          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 2
Query:   71 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            AV V+ G    +GT+ F  +G     V GS++GL  GDH   +H +G+ +    S GP F P               G L N+T    G+A  +I  + I LSG  S+IGR +VVH  P  D G G
Sbjct:    5 AVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPD-DLGRG 128          
The following BLAST results are available for this feature:
BLAST of EY659102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC_RABIT4.441e-1234.46Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_ONCVO4.441e-1239.53Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_MOUSE9.894e-1232.45Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_CHICK9.894e-1235.94Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_SCHMA1.292e-1132.45Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_DROVI1.292e-1138.46Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC2_XENLA1.292e-1136.43Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_CEREL1.688e-1135.71Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_CEBAP2.204e-1132.45Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_BOSMU2.204e-1135.71Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659102 ID=EY659102; Name=EY659102; organism=Citrus sinensis; type=EST; length=699bp
CCACGCGTCCGTCCATCTTCATTTTCCTCTCTCTAAGGGCGTTGTGATAT
CACACAGCACAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGT
CGCAAGGGAACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGT
GAAAGGAAGCCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTC
ACACTTACGGAAACATAAGCAATGATTGGATATCAACTGGACCCCCTTTT
AAACCTGCTGGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGA
GGGTATTGCTACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAA
ATTCCGTTATTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGAT
CCTGGTGATGGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGG
CTTCTCTCCATACCATAATAAATACATTTGACATGATGTCGAATGTGTCT
TGAATACTTAATAAAATAAATAATATGTTGTACGAATCAAAATCTGGCTA
TAATAAAATAAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGT
AGAATGTGGCCGTAAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACT
GTCCTTAAGACTATTTCTACTCCCTTAAAAAAAAAAAAAAAAAAAAGGG
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