EY659100 | Citrus Genome Database

Overview


Name	EY659100
Unique Name	EY659100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	888

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.229e-30
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXLPADWKNMKKEYDK 737
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPFCKKY+++ RAP  YF                 D + MK+EY++
Sbjct:  344 QLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEE 455

HSP 2 Score: 36.5798 bits (83), Expect = 6.229e-30
Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W L+ +CE  F   WIL    KW+P+  +TY  RL  R
Sbjct:  298 WLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALR 335

HSP 3 Score: 21.557 bits (44), Expect = 6.229e-30
Identity = 8/28 (28.57%), Postives = 15/28 (53.57%), Query Frame = 2

Query:  800 TXFSNTERMNHPTIVKVYPENKGGLSDE 883
            T +      +HP +++V+  + GGL  E
Sbjct:  481 TPWPGNNTRDHPGMIQVFLGHSGGLDTE 508

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.125e-30
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXLPADWKNMKKEYDK 737
            +L PVD+FV+T D   EPPIIT NT+LS+LAVDYPV+K++CYVSDD  S L F +L E S+FA+ WVPFCKKYNV+ RAP  YF                 D + MK+EY++
Sbjct:  290 KLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYFSEKIDYLKDKVQTTFVKDRRAMKREYEE 401

HSP 2 Score: 35.4242 bits (80), Expect = 7.125e-30
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  244 WLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 281

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.046e-29
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            +L PVD FV+T D   EPP++T NTVLS+L+VDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKK+N++ RAP  YF
Sbjct:  354 QLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYF 437

HSP 2 Score: 36.1946 bits (82), Expect = 2.046e-29
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 1

Query:  160 NHGFA-WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            N  FA W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  302 NDAFALWLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLR 345

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.879e-29
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            +L PVD+FV+T D   EPP++T NTVLS+L+VDYPV K+ACYVSDD  + L F SL E ++FAK WVPFCKK+N++ RAP  YF
Sbjct:  350 QLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYF 433

HSP 2 Score: 35.4242 bits (80), Expect = 5.879e-29
Identity = 17/44 (38.64%), Postives = 22/44 (50.00%), Query Frame = 1

Query:  157 KNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            KN    W  + +CE  F F W+L    KW P+  +TY  RL  R
Sbjct:  298 KNAYPLWLTSVICEIWFAFSWLLDQFPKWYPINRETYLDRLAIR 341

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.886e-29
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 3

Query:  411 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ WVPFCKKY+++ RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346

HSP 2 Score: 35.8094 bits (81), Expect = 5.886e-29
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W  + +CE  F F WIL    KW P+  +TY  RL  R
Sbjct:  218 WMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIAR 255

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.886e-29
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 3

Query:  411 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ WVPFCKKY+++ RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346

HSP 2 Score: 35.8094 bits (81), Expect = 5.886e-29
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W  + +CE  F F WIL    KW P+  +TY  RL  R
Sbjct:  218 WMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIAR 255

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.689e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            +L P+D FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKKY+++ RAP  YF
Sbjct:  354 QLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYF 437

HSP 2 Score: 34.2686 bits (77), Expect = 1.689e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  308 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLR 345

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.855e-28
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXLPADWKNMKKEYDK 737
            +L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L+F SL E S+FA+ WVPFCKKY+++ RAP  YF                 D + MK+EY++
Sbjct:  334 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEE 445

HSP 2 Score: 33.8834 bits (76), Expect = 1.855e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALR 325

HSP 3 Score: 20.7866 bits (42), Expect = 1.855e-28
Identity = 8/28 (28.57%), Postives = 14/28 (50.00%), Query Frame = 2

Query:  800 TXFSNTERMNHPTIVKVYPENKGGLSDE 883
            T +      +HP +++V+    GGL  E
Sbjct:  471 TPWPGNNTRDHPGMIQVFLGQNGGLDAE 498

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.863e-28
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K+ACYVSDD  + L F +L E ++F+K WVPFCKK+N++ RAP  YF
Sbjct:  337 QLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYF 420

HSP 2 Score: 33.4982 bits (75), Expect = 2.863e-28
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W  + +CE  F F W+L    KW P+  +T+  RL  R
Sbjct:  291 WLTSVICEIWFAFSWLLDQFPKWYPINRETFLDRLALR 328

[Close]

BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.726e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 3

Query:  408 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            +L PVD FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCK+Y+++ RAP  YF
Sbjct:  353 QLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436

HSP 2 Score: 34.2686 bits (77), Expect = 3.726e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 1

Query:  175 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 288
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLR 344

The following BLAST results are available for this feature:

BLAST of EY659100 vs. ExPASy Swiss-Prot

BLAST of EY659100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CESA2_ORYSI	6.229e-30	50.00	Probable cellulose synthase A catalytic subunit 2 ...	[more]
CESA4_ARATH	7.125e-30	53.57	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA6_ORYSJ	2.046e-29	60.71	Probable cellulose synthase A catalytic subunit 6 ...	[more]
CESA1_ARATH	5.879e-29	61.90	Cellulose synthase A catalytic subunit 1 [UDP-form...	[more]
CESA4_ORYSJ	5.886e-29	62.65	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA4_ORYSI	5.886e-29	62.65	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA3_ORYSJ	1.689e-28	60.71	Probable cellulose synthase A catalytic subunit 3 ...	[more]
CESA3_ARATH	1.855e-28	50.00	Cellulose synthase A catalytic subunit 3 [UDP-form...	[more]
CESAA_ARATH	2.863e-28	60.71	Probable cellulose synthase A catalytic subunit 10...	[more]
CESA5_ORYSJ	3.726e-28	60.71	Probable cellulose synthase A catalytic subunit 5 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-001-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659100 ID=EY659100; Name=EY659100; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGGTTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCT
CCCTCTATACGAAAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAG
ATGTTATCATCTTGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCA
ACGTTGAAGAATCATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTC
TTGTTTTACTTTCATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTT
TGACCTACAAAACATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAA
TAACGTTAGCATTAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATT
TTGCAAGTTACTACACACACACACACACACACATGTGTACGACTCAACAG
GATACAGGAGCTGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTG
AACTCGAGCCGCCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCA
GTTGATTATCCAGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTG
CTCACCTCTCAATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGC
TTTGGGTTCCATTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTT
AGATACTTCCCAGATAGTGAGCCGTCCGATTCCAGNTCAGGGGGACTCCC
TGCAGACTGGAAAAACATGAAGAAAGAGTATGATAAACTTAGCCAAACAT
AGAACATGCAGCCAAAAGACCTTCTTTATTTGATCTAACAAGAAGAATGA
CTGNTTTCTCCAATACAGAACGCATGAATCATCCCACAATAGTGAAGGTA
TATCCGGAGAACAAGGGAGGCCTCTCAGATGAGATCCA