EY659088

Overview
NameEY659088
Unique NameEY659088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7542 contig Csv1_Contig7542:17..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659088 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.615e-37
Identity = 80/217 (36.87%), Postives = 119/217 (54.84%), Query Frame = 3
Query:   12 GDSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPV-----PGPANCASNPGNW-----WEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 611
            G ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+R + N G   + +P ++PM +Y T+W+  +WAT+GG   +++  APF     D ++ GC V      G   C  + G+       +  ++  L+  +     W R   M Y YC+DK RY V P EC
Sbjct:   95 GFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309          
BLAST of EY659088 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.137e-32
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:   18 SAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 611
            S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:   79 STGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
BLAST of EY659088 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 51/159 (32.08%), Postives = 70/159 (44.03%), Query Frame = 3
Query:   18 SAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGN 479
            + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R        ++  +  YY +   +  P P P    S P N
Sbjct:  115 NVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEWLGRYDGRTPLQAEYEYVKYYPNGVPQDNPTPTPTIAPSTPTN 265          
The following BLAST results are available for this feature:
BLAST of EY659088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH33_ARATH2.615e-3736.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.137e-3239.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTH5.491e-1132.08Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659088 ID=EY659088; Name=EY659088; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAAT
TCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTTCCTGGGAAA
CCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTATGCAAATGGAA
AAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCTGCTGCAGAT
TATCACCTTTACACTATTCTCTGGAACCATCACCATATTGTCTTCTATGT
GGATGATGTGCCCATCAGGGTTTACAAAAACAGTGGAAGGGCTCCATTTC
CAATGAACCAACCCATGGGGGTGTATTCGACGCTGTGGGAAGCAGATGAC
TGGGCAACAAGAGGTGGTCTAGAGAAAATAGATTGGAGCAAAGCTCCTTT
TTATGCTTATTACAGAGACTTTGATATTGAGGGCTGCCCAGTTCCTGGAC
CAGCAAACTGTGCCTCGAACCCAGGTAACTGGTGGGAGGCAAATAATTAT
CAAGCCCTCACCGCCATGGAAGCAAGAAGATACAGATGGGTTCGTCTCAA
CCACATGATCTATGATTATTGCACTGATAAATCAAGATACCCAGTACCCC
CACCGGAATGCCTTGCCGGCATATAAATTCAACCCGCCAATTAAATTAGC
AGTTGGACGGTACTCCATATCCGTATCATATCATGTATATTACTTCACGT
ACACGTCCTTTGTATTATTCCCTATTCGTGTGAAAAGACTATACGCATAT
CAAGGGAGGGGCAGGAAGGAAAATAAACATTGTGGGCTTTAANTGTGGAT
ATGGGAGTGGGAAATATGGGGGATTCTGCTCCGCTGGACATATATAATCT
GATTTGATGCACAGATCTGTGCAATAANCC
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