EY676432

Overview
NameEY676432
Unique NameEY676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.179e-19
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQT 401
            K ++ PR P+E ERL+ E +L+ +YGLR K+ELWR Q  L R R  A++L+   +   +R  E EAL R+++  G L++   +  LD +L LTVE+ LERRLQT
Sbjct:    9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQT 110          

HSP 2 Score: 32.7278 bits (73), Expect = 3.179e-19
Identity = 13/37 (35.14%), Postives = 24/37 (64.86%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V++ G+A +   AR L+  RHI +G ++V  PS+ +
Sbjct:  111 IVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLV 147          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.198e-19
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K +  P  P+ KERL  E++L+GEYGLR KRE+W     L R R+ AR+LL L  +   +  E +ALL+R++  G ++E+   LD VL+LTV + LERRLQT
Sbjct:    9 KKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQT 107          

HSP 2 Score: 33.8834 bits (76), Expect = 3.198e-19
Identity = 13/37 (35.14%), Postives = 23/37 (62.16%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A S++HAR L+   HI +  + V  P + +
Sbjct:  108 VVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIV 144          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.382e-19
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQ 398
            K    PR P+EKERL  E +LVG YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQ 115          

HSP 2 Score: 38.5058 bits (88), Expect = 5.382e-19
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 1
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            VF +G+A SVHHAR+LI  R I +  Q+V+ P F +
Sbjct:  118 VFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMV 153          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.417e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KE L  E++LVGEYGLR KRELW  +  L  IR  AR LL L  +   RI   + L+ R+++ G L      LD VL+LTV + LERRLQT
Sbjct:    9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAE--ERIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQT 108          

HSP 2 Score: 32.3426 bits (72), Expect = 4.417e-18
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V++ G+A ++ HAR LI   HI V  + V  P + +
Sbjct:  109 IVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLV 145          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.462e-18
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K +  P+ P+ KERL  EL LVG YGLR KRELW+++      R+ AR LL L  +   +  E +ALL R++  G L E+   LD VL LT E+FLERRLQT
Sbjct:    9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQT 107          

HSP 2 Score: 30.4166 bits (67), Expect = 7.462e-18
Identity = 13/46 (28.26%), Postives = 26/46 (56.52%), Query Frame = 1
Query:  379 FLSVVSRPLVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIE 516
            FL    + +V+K G+A +++ AR LI   HI +  + +  P + ++
Sbjct:  100 FLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVK 145          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.258e-17
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R + KT++ P  P+ KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG L+     LD VL+LTVE+ LERRLQT
Sbjct:    6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQT 109          

HSP 2 Score: 31.9574 bits (71), Expect = 1.258e-17
Identity = 16/39 (41.03%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            LVF+ G+A +   AR LI   HI V  ++V  PS+ + V
Sbjct:  110 LVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTV 148          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.259e-17
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQT 110          

HSP 2 Score: 31.9574 bits (71), Expect = 1.259e-17
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 1
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIE 516
            V++ G+A ++  AR  I   HI+V  Q V  PS+ ++
Sbjct:  112 VYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVK 148          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.597e-17
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDL-LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K +  PR P+EK+R+D E +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+T
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLET 110          

HSP 2 Score: 32.7278 bits (73), Expect = 3.597e-17
Identity = 15/38 (39.47%), Postives = 23/38 (60.53%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIE 516
            LV+K  +A ++  AR  I   HI+V  ++V  PSF +E
Sbjct:  111 LVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVE 148          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.101e-17
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT----LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            + + K +  P  P++K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT
Sbjct:    5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQT 113          

HSP 2 Score: 30.0314 bits (66), Expect = 6.101e-17
Identity = 15/45 (33.33%), Postives = 24/45 (53.33%), Query Frame = 1
Query:  379 FLSVVSRPLVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            FL    + +V++ G+A ++  AR  I   HI V  + V  PSF +
Sbjct:  106 FLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIV 150          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K +  PR P+EKER+D E ++V +YGL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  L E+   LD VL+LTVEN L+RRLQT
Sbjct:    9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQT 110          
The following BLAST results are available for this feature:
BLAST of EY676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS4_METKA3.179e-1945.1930S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_IGNH43.198e-1947.0630S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]
RS9_ENCCU5.382e-1944.5540S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_THEPD4.417e-1847.0630S ribosomal protein S4P OS=Thermofilum pendens (... [more]
RS4_HYPBU7.462e-1849.0230S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_METJA1.258e-1740.5730S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_METTP1.259e-1739.8130S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_PICTO3.597e-1742.7230S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_ARCFU6.101e-1740.0030S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_THEAC7.464e-1746.6730S ribosomal protein S4P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676432 ID=EY676432; Name=EY676432; organism=Citrus sinensis; type=EST; length=946bp
CACGCGTCCGATCGCAGAGAGAGAGACCTTTTGAGTGAGGGTAGCACCAG
CGGCGCGCAAAGATGGCCCCCTTTTCATTCTACCGCAACTATGGGAAAAC
CTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATCCTGAGT
TGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGG
GTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCAC
TCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCA
GGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGAT
TATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGAC
CCCTTGTGTTCAAGAGTGGCATGGCTGGGTCGGTTCACCATGCTCGAGTG
CTCATCAGGCAAAGGCACATTAGGGTTGGGAGGCAACTTGTCAACTTTCC
CTCCTTTTGTATTGAGGTTTGTTTCCCAAAACCCCTTTGAATTCTCCCTT
CACAATTCCTTTCCGGAAGGGGGGCCCCCGGAAAAAATTGGAAAAAAGGG
AAATCTCAGGGTGCCGCCAATAAGGGGCCGCCCGGGTGGAAAAGGGGGAA
GAAAAGGATAGAAAAAAAAAATTTCCGTGGGGAAAAAGATAGGTTTTTTT
ATGGGTCCCAGGAGGGATTTCTGGGCGGAACTTTTGGGTGGGGGCTATTA
TGCTTTCCCCGAAGTTTTTTGTGTTTTTTTTGTGGACAATTTTTTTTGAG
ATAAAAGGGGGGGGGGTTTTTGTTGGGGTGTTTGGGTGTTTTTACGAAGT
ACACACTTGATTTGAAAAGAATTTTTTTTTGTTGTTTTTTTTGGGGAGGG
GACAGCCTCTGTTATTGATTGTTAACAATTCGTTATTTTTTATGTA
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