EY676432 | Citrus Genome Database

Overview


Name	EY676432
Unique Name	EY676432
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	946

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.912e-17
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQT
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLL-PADAALDDVLSLTVEDVLERRLQT 107

HSP 2 Score: 33.113 bits (74), Expect = 7.912e-17
Identity = 14/37 (37.84%), Postives = 22/37 (59.46%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            LV+K G+A ++  AR LI   HI V  Q++  P + +
Sbjct:  108 LVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLV 144

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.912e-17
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQT
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQT 107

HSP 2 Score: 35.4242 bits (80), Expect = 7.912e-17
Identity = 16/37 (43.24%), Postives = 23/37 (62.16%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            LVFK G+A ++  AR LI   HI V  Q++  PS+ +
Sbjct:  108 LVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLV 144

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.925e-17
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 3

Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R   K +  P  P+ K  L  E  L+G+YGLR K+E+W  Q  +   R+ AR LL L   E+N R     + L+++++R G LE+  + LD +L+LT EN+LERRLQT
Sbjct:    5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQT 108

HSP 2 Score: 30.4166 bits (67), Expect = 7.925e-17
Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A +++ AR LI   HI +  + V  P + +
Sbjct:  109 IVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVV 145

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.271e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 3

Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQT 106

HSP 2 Score: 31.9574 bits (71), Expect = 2.271e-16
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 1

Query:  379 FLSVVSRPLVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            FL    + +V++ G A S + AR LI   HIRV  + +  PS+ +++
Sbjct:   99 FLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKI 145

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.938e-16
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQT 107

HSP 2 Score: 33.113 bits (74), Expect = 2.938e-16
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A ++  AR LI   HI V  Q++  PS+ +
Sbjct:  108 IVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLV 144

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.940e-16
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            + ++ P  P+ +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT
Sbjct:    9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP--AERSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQT 108

HSP 2 Score: 31.9574 bits (71), Expect = 2.940e-16
Identity = 13/37 (35.14%), Postives = 23/37 (62.16%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A +++ AR LI   HI +G + V  P + +
Sbjct:  109 IVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIV 145

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.819e-16
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQT 107

HSP 2 Score: 33.113 bits (74), Expect = 3.819e-16
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A ++  AR LI   HI V  Q++  PS+ +
Sbjct:  108 IVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLV 144

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.819e-16
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQT 107

HSP 2 Score: 33.113 bits (74), Expect = 3.819e-16
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A ++  AR LI   HI V  Q++  PS+ +
Sbjct:  108 IVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLV 144

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.090e-15
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K +  P+R +EK R++ E  L   YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT
Sbjct:    9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQT 112

HSP 2 Score: 32.3426 bits (72), Expect = 1.090e-15
Identity = 14/39 (35.90%), Postives = 23/39 (58.97%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V++ G+A S   AR LI   HI +  Q V+ PS+ + +
Sbjct:  113 IVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSI 151

[Close]

BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.090e-15
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 3

Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLL-PADAVLDDVLSLTVEDVLDRRLQT 107

HSP 2 Score: 33.4982 bits (75), Expect = 1.090e-15
Identity = 14/37 (37.84%), Postives = 22/37 (59.46%), Query Frame = 1

Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +VFK G+A ++  AR LI   HI V  Q++  P + +
Sbjct:  108 IVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLV 144

The following BLAST results are available for this feature:

BLAST of EY676432 vs. ExPASy Swiss-Prot

BLAST of EY676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
RS4_THEGJ	7.912e-17	46.08	30S ribosomal protein S4P OS=Thermococcus gammatol...	[more]
RS4_THESM	7.912e-17	44.12	30S ribosomal protein S4P OS=Thermococcus sibiricu...	[more]
RS4_SULAC	7.925e-17	41.67	30S ribosomal protein S4P OS=Sulfolobus acidocalda...	[more]
RS4_KORCO	2.271e-16	37.74	30S ribosomal protein S4P OS=Korarchaeum cryptofil...	[more]
RS4_PYRHO	2.938e-16	46.08	30S ribosomal protein S4P OS=Pyrococcus horikoshii...	[more]
RS4_SULTO	2.940e-16	39.22	30S ribosomal protein S4P OS=Sulfolobus tokodaii G...	[more]
RS4_PYRFU	3.819e-16	45.10	30S ribosomal protein S4P OS=Pyrococcus furiosus G...	[more]
RS4_PYRAB	3.819e-16	45.10	30S ribosomal protein S4P OS=Pyrococcus abyssi GN=...	[more]
RS4_METLZ	1.090e-15	39.05	30S ribosomal protein S4P OS=Methanocorpusculum la...	[more]
RS4_THEON	1.090e-15	44.12	30S ribosomal protein S4P OS=Thermococcus onnurine...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-022-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY676432 ID=EY676432; Name=EY676432; organism=Citrus sinensis; type=EST; length=946bp
CACGCGTCCGATCGCAGAGAGAGAGACCTTTTGAGTGAGGGTAGCACCAG
CGGCGCGCAAAGATGGCCCCCTTTTCATTCTACCGCAACTATGGGAAAAC
CTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATCCTGAGT
TGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGG
GTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCAC
TCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCA
GGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGAT
TATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGAC
CCCTTGTGTTCAAGAGTGGCATGGCTGGGTCGGTTCACCATGCTCGAGTG
CTCATCAGGCAAAGGCACATTAGGGTTGGGAGGCAACTTGTCAACTTTCC
CTCCTTTTGTATTGAGGTTTGTTTCCCAAAACCCCTTTGAATTCTCCCTT
CACAATTCCTTTCCGGAAGGGGGGCCCCCGGAAAAAATTGGAAAAAAGGG
AAATCTCAGGGTGCCGCCAATAAGGGGCCGCCCGGGTGGAAAAGGGGGAA
GAAAAGGATAGAAAAAAAAAATTTCCGTGGGGAAAAAGATAGGTTTTTTT
ATGGGTCCCAGGAGGGATTTCTGGGCGGAACTTTTGGGTGGGGGCTATTA
TGCTTTCCCCGAAGTTTTTTGTGTTTTTTTTGTGGACAATTTTTTTTGAG
ATAAAAGGGGGGGGGGTTTTTGTTGGGGTGTTTGGGTGTTTTTACGAAGT
ACACACTTGATTTGAAAAGAATTTTTTTTTGTTGTTTTTTTTGGGGAGGG
GACAGCCTCTGTTATTGATTGTTAACAATTCGTTATTTTTTATGTA