EY676432

Overview
NameEY676432
Unique NameEY676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676432_ssr16 microsatellite EY676432_ssr16:16..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.401e-15
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P+ P+ KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRRE--ASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQT 108

HSP 2 Score: 29.261 bits (64), Expect = 2.401e-15
Identity = 11/37 (29.73%), Postives = 22/37 (59.46%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V+K G+A +++ AR L+   HI +  + V  P + +
Sbjct:  109 IVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLV 145
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.111e-15
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 3 
Query:  108 KPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEA---LLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KP+R +  + L  ELRL+GEYGLR K+ELW  +  L  I++ AR++L+     P  I  GEA   L  R+ R G + +    LD VLAL V   LERRLQT
Sbjct:   15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQT 110

HSP 2 Score: 32.7278 bits (73), Expect = 3.111e-15
Identity = 15/37 (40.54%), Postives = 21/37 (56.76%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            LV++ GMA S+H AR LI   HI +    V  P + +
Sbjct:  111 LVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.830e-15
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLL-PADAVLDDVLSLTVEDVLERRLQT 107

HSP 2 Score: 29.6462 bits (65), Expect = 6.830e-15
Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCI 513
            +V++ G+A ++  AR LI   HI V  Q++  P + +
Sbjct:  108 IVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLV 144
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.830e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQT 108

HSP 2 Score: 31.187 bits (69), Expect = 6.830e-15
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V+K G+A + + AR LI   HI V  + V  P + + V
Sbjct:  109 IVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.830e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQT 108

HSP 2 Score: 31.187 bits (69), Expect = 6.830e-15
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V+K G+A + + AR LI   HI V  + V  P + + V
Sbjct:  109 IVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.830e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQT 108

HSP 2 Score: 31.187 bits (69), Expect = 6.830e-15
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V+K G+A + + AR LI   HI V  + V  P + + V
Sbjct:  109 IVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.830e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQT 108

HSP 2 Score: 31.187 bits (69), Expect = 6.830e-15
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V+K G+A + + AR LI   HI V  + V  P + + V
Sbjct:  109 IVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.830e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQT 108

HSP 2 Score: 31.187 bits (69), Expect = 6.830e-15
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V+K G+A + + AR LI   HI V  + V  P + + V
Sbjct:  109 IVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.830e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQT 108

HSP 2 Score: 31.187 bits (69), Expect = 6.830e-15
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V+K G+A + + AR LI   HI V  + V  P + + V
Sbjct:  109 IVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K +  PR P+EK+R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY  L +    LD VL+LTVEN L+RRLQT
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQT 110
The following BLAST results are available for this feature:
BLAST of EY676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS4_AERPE2.401e-1539.2230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_CALMQ3.111e-1545.5430S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_PYRKO6.830e-1545.1030S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_SULIY6.830e-1538.2430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN6.830e-1538.2430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM6.830e-1538.2430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL6.830e-1538.2430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK6.830e-1538.2430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA6.830e-1538.2430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_THEVO9.124e-1543.8130S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676432 ID=EY676432; Name=EY676432; organism=Citrus sinensis; type=EST; length=946bp
CACGCGTCCGATCGCAGAGAGAGAGACCTTTTGAGTGAGGGTAGCACCAG
CGGCGCGCAAAGATGGCCCCCTTTTCATTCTACCGCAACTATGGGAAAAC
CTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATCCTGAGT
TGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGG
GTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCAC
TCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCA
GGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGAT
TATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGAC
CCCTTGTGTTCAAGAGTGGCATGGCTGGGTCGGTTCACCATGCTCGAGTG
CTCATCAGGCAAAGGCACATTAGGGTTGGGAGGCAACTTGTCAACTTTCC
CTCCTTTTGTATTGAGGTTTGTTTCCCAAAACCCCTTTGAATTCTCCCTT
CACAATTCCTTTCCGGAAGGGGGGCCCCCGGAAAAAATTGGAAAAAAGGG
AAATCTCAGGGTGCCGCCAATAAGGGGCCGCCCGGGTGGAAAAGGGGGAA
GAAAAGGATAGAAAAAAAAAATTTCCGTGGGGAAAAAGATAGGTTTTTTT
ATGGGTCCCAGGAGGGATTTCTGGGCGGAACTTTTGGGTGGGGGCTATTA
TGCTTTCCCCGAAGTTTTTTGTGTTTTTTTTGTGGACAATTTTTTTTGAG
ATAAAAGGGGGGGGGGTTTTTGTTGGGGTGTTTGGGTGTTTTTACGAAGT
ACACACTTGATTTGAAAAGAATTTTTTTTTGTTGTTTTTTTTGGGGAGGG
GACAGCCTCTGTTATTGATTGTTAACAATTCGTTATTTTTTATGTA
back to top