EY676432

Overview
NameEY676432
Unique NameEY676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676432_ssr16 microsatellite EY676432_ssr16:16..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQT
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQT 112          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.533e-14
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R   KT+  P  P+  ER+  E  L  +YGL  K+E+W+++  L   R  AR L++  + + +   E   L   ++RYG L +    LD VL+L +E+ LERRLQT
Sbjct:    5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS--DTSAQGEKEAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQT 108          

HSP 2 Score: 31.9574 bits (71), Expect = 2.533e-14
Identity = 16/59 (27.12%), Postives = 29/59 (49.15%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*ILPSQFLSGRGAP 579
            LVF+ G+A +   AR  I   HI V  + +N PS+ + +     +  +P+  ++    P
Sbjct:  109 LVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSPMASESHP 167          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-14
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R  GK +  P  P+  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT
Sbjct:    5 RRLGKKYDTPNHPWIGERIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQT 108          

HSP 2 Score: 30.4166 bits (67), Expect = 3.292e-14
Identity = 16/59 (27.12%), Postives = 28/59 (47.46%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*ILPSQFLSGRGAP 579
            +V+K G+A +   AR  I   HI V  + V  PS+ + V     +  +P+  ++    P
Sbjct:  109 MVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSPMASENHP 167          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.277e-14
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R  GK +  P  P+  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD++L+L +E+ LERRLQT
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEREISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQT 108          

HSP 2 Score: 30.4166 bits (67), Expect = 4.277e-14
Identity = 15/39 (38.46%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            LV++ G+A +   AR LI   HI V  + V  PS+ + V
Sbjct:  109 LVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSV 147          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.724e-14
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQEWHGWVGSP 440
            K ++ P  P++ ER+  E  L+G YGL+ K ELWR Q  L   R  AR LL    ++     E E  L R+ RYG L E Q++LD VL+L V + LERRLQT   ++  G+  +P
Sbjct:    8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRK--GYANTP 116          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.009e-13
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQEWHGWVGSPCSSAHQAKAH 470
            K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q  L R R AAR+LL          +   + E LL  ++R G L    +  D VL+L ++  LERRLQT   ++  G   SP   A Q   H
Sbjct:    9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQ--GLARSP-KQARQMVTH 132          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.223e-13
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQE 416
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT   +E
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYRE 109          

HSP 2 Score: 26.9498 bits (58), Expect = 1.223e-13
Identity = 11/39 (28.21%), Postives = 21/39 (53.85%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V++ G+A ++  AR  +   H+ V    V  PS+ + V
Sbjct:  105 VVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPV 143          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.223e-13
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQE 416
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT   +E
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYRE 109          

HSP 2 Score: 26.9498 bits (58), Expect = 1.223e-13
Identity = 11/39 (28.21%), Postives = 21/39 (53.85%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +V++ G+A ++  AR  +   H+ V    V  PS+ + V
Sbjct:  105 VVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPV 143          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD---EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQEWHGWVGSP 440
            K ++ P+RP+E  R++ E RLV EYGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT   +   G+  SP
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYR--RGFARSP 123          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K+F+ PR P+++ R+  E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG + +S   +D +L+L  EN LERRLQT
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGII-KSDADIDDILSLKTENILERRLQT 115          
The following BLAST results are available for this feature:
BLAST of EY676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS4_METB69.124e-1546.6730S ribosomal protein S4P OS=Methanoregula boonei ... [more]
RS4_META32.533e-1436.7930S ribosomal protein S4P OS=Methanococcus aeolicu... [more]
RS4_METM73.292e-1436.7930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METVS4.277e-1435.8530S ribosomal protein S4P OS=Methanococcus vanniel... [more]
RS4_HALMA7.724e-1441.7430S ribosomal protein S4P OS=Haloarcula marismortu... [more]
RS4_METPE1.009e-1340.6330S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_HALSA1.223e-1341.1230S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS31.223e-1341.1230S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_METHJ1.721e-1340.6830S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_METBF2.247e-1340.7430S ribosomal protein S4P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676432 ID=EY676432; Name=EY676432; organism=Citrus sinensis; type=EST; length=946bp
CACGCGTCCGATCGCAGAGAGAGAGACCTTTTGAGTGAGGGTAGCACCAG
CGGCGCGCAAAGATGGCCCCCTTTTCATTCTACCGCAACTATGGGAAAAC
CTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATCCTGAGT
TGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGG
GTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCAC
TCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCA
GGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGAT
TATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGAC
CCCTTGTGTTCAAGAGTGGCATGGCTGGGTCGGTTCACCATGCTCGAGTG
CTCATCAGGCAAAGGCACATTAGGGTTGGGAGGCAACTTGTCAACTTTCC
CTCCTTTTGTATTGAGGTTTGTTTCCCAAAACCCCTTTGAATTCTCCCTT
CACAATTCCTTTCCGGAAGGGGGGCCCCCGGAAAAAATTGGAAAAAAGGG
AAATCTCAGGGTGCCGCCAATAAGGGGCCGCCCGGGTGGAAAAGGGGGAA
GAAAAGGATAGAAAAAAAAAATTTCCGTGGGGAAAAAGATAGGTTTTTTT
ATGGGTCCCAGGAGGGATTTCTGGGCGGAACTTTTGGGTGGGGGCTATTA
TGCTTTCCCCGAAGTTTTTTGTGTTTTTTTTGTGGACAATTTTTTTTGAG
ATAAAAGGGGGGGGGGTTTTTGTTGGGGTGTTTGGGTGTTTTTACGAAGT
ACACACTTGATTTGAAAAGAATTTTTTTTTGTTGTTTTTTTTGGGGAGGG
GACAGCCTCTGTTATTGATTGTTAACAATTCGTTATTTTTTATGTA
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