EY676432

Overview
NameEY676432
Unique NameEY676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.673e-13
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R  GK +  P  P+  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQT 108          

HSP 2 Score: 27.7202 bits (60), Expect = 2.673e-13
Identity = 14/39 (35.90%), Postives = 21/39 (53.85%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEV 519
            +VF+ G+A +   AR  I   HI V  + V  P++ I V
Sbjct:  109 IVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISV 147          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.866e-13
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  PY+ ER+  E  L+G YGL+ K ELWR Q  L   R  AR L+  + +    + E  GE  L R+ RYG L  + + +  VL L V + LERRLQT
Sbjct:    8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGIL-SADDDISKVLGLDVSDILERRLQT 109          

HSP 2 Score: 25.7942 bits (55), Expect = 5.866e-13
Identity = 13/38 (34.21%), Postives = 19/38 (50.00%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIE 516
            +V++ G+A +   AR  I   HI V    V  PS  +E
Sbjct:  110 IVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVE 147          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.539e-13
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQEWHGWVGSP 440
            K +  P+R +EK RL+ E RL+ +YGLR KRELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG + E+ +  D VLAL VE  L+RRLQT  ++   G+  SP
Sbjct:    9 KQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLR--RGFARSP 123          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            + ++KP+RP+  +    ELR +G +GLR KRELW+    LSR+RN AR LL L ++   R  +   LLR + R G + +  + LD VL L V + L RRLQT
Sbjct:    9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQT 107          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.038e-11
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTPCVQE 416
            + ++ P  P++K+RL  E RL+ EYGL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT  V++
Sbjct:    6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRK 111          

HSP 2 Score: 26.5646 bits (57), Expect = 1.038e-11
Identity = 11/38 (28.95%), Postives = 23/38 (60.53%), Query Frame = 1
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIE 516
            ++ + G+A ++  AR  I   HI V  ++V+ PS+ ++
Sbjct:  107 MLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVK 144          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQT 108          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  108 KPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KP++ + K+ L  EL+L+GEYGLR KRELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQT 110          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  108 KPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+   +LD +L+L V   LERRLQT
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQT 110          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 3
Query:   84 RNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            R  GK +  P  P+  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L ES+  LD+VL+L +E+ LERRLQT
Sbjct:    5 RRLGKKYDTPNHPWIGERIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQT 108          
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            K+++ P+ P+++ R+  E++LV  YGLR K+E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT
Sbjct:    9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQT 115          
The following BLAST results are available for this feature:
BLAST of EY676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS4_METMP2.673e-1336.7930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_HALWD5.866e-1341.3530S ribosomal protein S4P OS=Haloquadratum walsbyi... [more]
RS4_METMJ6.539e-1339.8330S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_CENSY1.115e-1243.1430S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS4_NANEQ1.038e-1139.2530S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_SULSO1.233e-1138.2430S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_PYRAR1.233e-1142.0030S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_PYRAE1.233e-1141.0030S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_METM51.233e-1137.7430S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METAC1.233e-1137.0430S ribosomal protein S4P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676432 ID=EY676432; Name=EY676432; organism=Citrus sinensis; type=EST; length=946bp
CACGCGTCCGATCGCAGAGAGAGAGACCTTTTGAGTGAGGGTAGCACCAG
CGGCGCGCAAAGATGGCCCCCTTTTCATTCTACCGCAACTATGGGAAAAC
CTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATCCTGAGT
TGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGG
GTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCAC
TCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCA
GGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGAT
TATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGAC
CCCTTGTGTTCAAGAGTGGCATGGCTGGGTCGGTTCACCATGCTCGAGTG
CTCATCAGGCAAAGGCACATTAGGGTTGGGAGGCAACTTGTCAACTTTCC
CTCCTTTTGTATTGAGGTTTGTTTCCCAAAACCCCTTTGAATTCTCCCTT
CACAATTCCTTTCCGGAAGGGGGGCCCCCGGAAAAAATTGGAAAAAAGGG
AAATCTCAGGGTGCCGCCAATAAGGGGCCGCCCGGGTGGAAAAGGGGGAA
GAAAAGGATAGAAAAAAAAAATTTCCGTGGGGAAAAAGATAGGTTTTTTT
ATGGGTCCCAGGAGGGATTTCTGGGCGGAACTTTTGGGTGGGGGCTATTA
TGCTTTCCCCGAAGTTTTTTGTGTTTTTTTTGTGGACAATTTTTTTTGAG
ATAAAAGGGGGGGGGGTTTTTGTTGGGGTGTTTGGGTGTTTTTACGAAGT
ACACACTTGATTTGAAAAGAATTTTTTTTTGTTGTTTTTTTTGGGGAGGG
GACAGCCTCTGTTATTGATTGTTAACAATTCGTTATTTTTTATGTA
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