EY659067

Overview
NameEY659067
Unique NameEY659067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659067 vs. ExPASy Swiss-Prot
Match: YJDL_ECOLI (Inner membrane transporter yjdL OS=Escherichia coli (strain K12) GN=yjdL PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 51/192 (26.56%), Postives = 93/192 (48.44%), Query Frame = 3 
Query:   15 FERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG 590
            +E  +FYG+++ L+ YLT QL  D   ++   + ++ +V++TP+LG ++AD  +G        +L+  LG ++L               GI + ++ S     Y +L II  G G  K NIS    + +D+ N + R+     F+    +  IG++ A +      +  GW +G+ +   G+   L+IF  G
Sbjct:   19 WEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIAGALLMTLGHVVL---------------GIDTNSTFS----LYLALAIIICGYGLFKSNISCLLGELYDE-NDHRRD---GGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIGLLIFLSG 187
The following BLAST results are available for this feature:
BLAST of EY659067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
YJDL_ECOLI1.994e-1126.56Inner membrane transporter yjdL OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659067 ID=EY659067; Name=EY659067; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGGCATTCGAGAGAATGGCCTTCTATGGAATACAATCAAAT
TTAGTGAACTACTTGACAAGCCAACTCCATGAAGACACGGTTTCTTCCGT
CAGAAATGTAAACAACTGGTCAGGTGTTGTGTGGATTACACCACTTCTTG
GTGCCTACATTGCTGATACTTACATTGGTCGTTTTTGGACTTTCACTCTC
TCATCTTTAATTTATGTCCTGGGAATGATACTTCTCACAATGGCAGCTTC
GTTGAAATTTATGAAGCCAACATGCACAAATGGAATCTGCAGCAAGACCT
CTACTTCACAAATTGCTTTCTTTTACTCGTCTCTTTACATCATAGCAATT
GGTGCAGGTGGAACAAAGCCTAACATATCCACTTTTGGTGCAGACCAGTT
CGATGATTTTAATCCCTATGAGAGAAACCTCAAGGTCTCATTCTTTAACT
GGTGGATGTTTAGCTCTTTTATTGGAGCTTTGTGTGCCACTTTAGGGCTT
GTTTACATTCAAGAGAACTTGGGATGGGGATTAGGCTATGGTATTCCAAC
AGCTGGTTTGTTATTTTCCTTAGTCATCTTCTATATAGGAAAGCCCATTT
ACANGCACAAAATTAGGAAGACCAAAAGCCCTGCAAGGGACTTGATTCGA
GTTCCCATAGCTGCTTTCCNGAACCGGAAAATTCAGCTCCCTGACAACCA
TCAGAGCTTCATGAATTTGATACACAGATTACATTCGAAGTGGAAAACGC
AGGTGCTTCACTCTCAGCTTTCANGTGCTGGGAACAGCTGCATAAAACAT
GGCAATGGAGAAAAGCAAACCTCATGCCAGTGACGCAAGAAAAGAACAAA
CTGTTCTAAGGATGCATTGATTGCTAGGACCTAATCCTAGAACATTGGCA
CAATCACCT
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