EY676196

Overview
NameEY676196
Unique NameEY676196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676196 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.220e-37
Identity = 96/193 (49.74%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   50 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPQPRERVPGSGS*IQKQLRFXXXXXXXXXXXL-----KRKSIPDYGSPKE-ISQIRGIISWGKKTKIPGKTSFGGGGSN 601
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNP      PG      + LR+           +      +KSI DYGSP+E +SQ+  ++  GK+    G+T+  GG  N
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPG------QVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLL--GKQAYF-GETASEGGFDN 179          
BLAST of EY676196 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.394e-31
Identity = 89/197 (45.18%), Postives = 113/197 (57.36%), Query Frame = 2
Query:   50 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPQPRERVPGSGS*IQKQLRFXXXXXXXXXXXL-----KRKSIPDYGSPKE-ISQIRGIISWGKKTKIPGKTSFGGG 592
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNP      PG      + LR+           +      +KSI DYGSP++ +SQ+  ++  GK+    GKT   GG
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPG------QVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLL--GKQAYF-GKTISEGG 181          
BLAST of EY676196 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.990e-30
Identity = 76/145 (52.41%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPQPRERVPGSGS*IQKQLRFXXXXXXXXXXXL-----KRKSIPDYGSPKE-ISQIRGIISWGKKTKIPGKTSFGGGGSN 601
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNP      PG      + LR+           +      +KSI DYGSP+E +SQ+  ++  GK+    G+T+  GG  N
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPG------QVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLL--GKQAYF-GETACEGGFDN 136          
BLAST of EY676196 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.226e-29
Identity = 83/185 (44.86%), Postives = 109/185 (58.92%), Query Frame = 2
Query:   50 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPQPRERVPGSGS*IQKQLRFXXXXXXXXXXXL-----KRKSIPDYGSPKE-ISQIRGII---SWGKKTKIPG 571
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNP      PG      + LR+           +      +K+I DYGSP+E +SQ+  ++   S+G KT   G
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPG------QVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEG 174          
BLAST of EY676196 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 2
Query:   50 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPQPRERVPG 409
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNP      PG
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPG 101          
The following BLAST results are available for this feature:
BLAST of EY676196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_SINAL2.220e-3749.74Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.394e-3145.18Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU9.990e-3052.41Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT2.226e-2944.86Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE5.322e-1543.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-019-H06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676196 ID=EY676196; Name=EY676196; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGAAAAATAAAAAATAAAGCCCATAGAGCGAAAAGAAAAAA
TGGCATCAACTCAATGCTTCCTGCACCACCATGCACTCTCTACTACACCA
GCAAGAACATCATCATCTCAGCGCCACGTGTCGAACATCAAGCCCACCCA
GATTGTCTGCCGTGCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCG
CCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTC
GGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATCAGCCAATGT
GTTTGGTAAGCCAAAGACCAACACTGACTTCTTGCCATACAATGGAGATG
GATTCAAGCTGTCGATTCCCTCAAAATGGAACCCCCAGCCAAGAGAGAGA
GTTCCCGGGTCAGGTTCTTAAATACAAAAACAACTTCGATTTCAACAGCA
GATGTCTCCGTCATAATCACCCCAACTGAAAAGAAAATCCATCCCTGACT
ACGGTTCCCCCAAAGAAATTTCACAAATAAGGGGGATAATTAGCTGGGGA
AAAAAAACAAAAATTCCGGGGAAAACTTCCTTCGGAGGGGGGGGTTCGAA
CCTGGAGGCAAGAGGAACACGCAAAAAATCATAGAAGCTTAAACCAAAAA
AAACAAAAAAAATCTAAGGAATTGAAAAAAAAAAAAACGCCAGAAGGGAA
AAAAAGAGGGGCACGCAAAACAGAAGAAAGAAACCAATAATTTAAAGGGA
ACAACATTTGATAATCGGAGAGGGGGACGCAAGGGGGGAAAAAGAAGGGG
GGTAGACGGGAGGGAAGAGGAGAAAAGGAAGAGAAAGAGGAAAGAGACCA
GTAGTAATGAAGAAGAGATGAGGAATAAGAGAAAGGGGAGCGACAAAGAT
AAGAGAAAGGGCAAGCGACAGACGGAATGAGTAGGAGAGGC
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